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Comparative study of the SBP-box gene family in rice siblings

Journal of biosciences, 2020-12, Vol.45 (1), Article 83

2020

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Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives

Journal of computer-aided molecular design, 2022-03, Vol.36 (3), p.205-224

2022

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Prevention of inorganic arsenic induced squamous cell carcinoma of the skin in Swiss albino mice by black tea through epigenetic modulation

Heliyon, 2022-08, Vol.8 (8), p.e10341-e10341, Article e10341

2022

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Dynamical Features of Cognate Site Recognition in bZIP–DNA Interaction

ACS omega, 2019-01, Vol.4 (1), p.292-308

2019

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Structural Stability of the Anticodon Stem Loop Domains of the Unmodified Yeast and Escherichia coli tRNAPhe: Differing Views from Different Force Fields

ACS omega, 2019-02, Vol.4 (2), p.3029-3044

2019

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Plant Polypeptide Hormone Systemin Prefers Polyproline II Conformation in Solution

ACS omega, 2017-10, Vol.2 (10), p.6831-6843

2017

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Specificity determinants for the abscisic acid response element

FEBS open bio, 2013-01, Vol.3 (1), p.101-105

2013

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Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: prediction and validation

BMC genomics, 2011-09, Vol.12 (1), p.463-463, Article 463

2011

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Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N 1-methylpseudouridine within RNA duplexes

Physical chemistry chemical physics : PCCP, 2024-01, Vol.26 (2), p.992-999

2024

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Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and 1-methylpseudouridine within RNA duplexes

Physical chemistry chemical physics : PCCP, 2024-01, Vol.26 (2), p.992-999

2024

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Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N1-methylpseudouridine within RNA duplexes

Physical chemistry chemical physics : PCCP, 2024-01, Vol.26 (2), p.992-999

2024

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Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space

Journal of chemical information and modeling, 2020-10, Vol.60 (10), p.4995-5002

2020

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Inosine and its methyl derivatives: Occurrence, biogenesis, and function in RNA

Progress in biophysics and molecular biology, 2022-03, Vol.169-170, p.21-52

2022

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LNA-induced dynamic stability in a therapeutic aptamer: insights from molecular dynamics simulations

Journal of biomolecular structure & dynamics, 2023-04, Vol.41 (6), p.2221-2230

2023

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Analysis of the interaction of a non-canonical twin half-site of Cyclic AMP-Response Element (CRE) with CRE-binding protein

Biochimie, 2023-08, Vol.211, p.25-34

2023

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Ensemble Allosteric Model for the Modified Wobble Hypothesis

The journal of physical chemistry letters, 2020-08, Vol.11 (15), p.6337-6343

2020

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Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair

Scientific reports, 2019-11, Vol.9 (1), p.16278-13, Article 16278

2019

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Inclusion of chrysin in β-cyclodextrin nanocavity and its effect on antioxidant potential of chrysin: A spectroscopic and molecular modeling approach

Journal of molecular structure, 2010-08, Vol.977 (1), p.180-188

2010

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Reparameterizations of the χ Torsion and Lennard-Jones σ Parameters Improve the Conformational Characteristics of Modified Uridines

Journal of computational chemistry, 2016-06, Vol.37 (17), p.1576-1588

2016

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Probing the functional conformations of an atypical proline-rich fusion peptide

Physical chemistry chemical physics : PCCP, 2019, Vol.21 (37), p.2727-2742

2019

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Reparameterizations of the ? Torsion and Lennard-Jones s Parameters Improve the Conformational Characteristics of Modified Uridines

Journal of computational chemistry, 2016-06, Vol.37 (17), p.1576

2016

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Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields

Journal of chemical information and modeling, 2014-04, Vol.54 (4), p.1129-1142

2014

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Arabidopsis thaliana regulatory element analyzer

Bioinformatics, 2008-10, Vol.24 (19), p.2263-2264

2008

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Effect of Inactivating Mutations on Peptide Conformational Ensembles: The Plant Polypeptide Hormone Systemin

Journal of chemical information and modeling, 2016-07, Vol.56 (7), p.1267-1281

2016

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Theoretical Analysis of the Excited State Properties of Wybutine: A Natural Probe for Transfer RNA Dynamics

International journal of molecular sciences, 2004-03, Vol.5 (3), p.75-83

2004

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Comparative study of the SBP-box gene family in rice siblings

Data-informed reparameterization of modified RNA and the effect of explicit water models: application to pseudouridine and derivatives

Prevention of inorganic arsenic induced squamous cell carcinoma of the skin in Swiss albino mice by black tea through epigenetic modulation

Dynamical Features of Cognate Site Recognition in bZIP–DNA Interaction

Structural Stability of the Anticodon Stem Loop Domains of the Unmodified Yeast and Escherichia coli tRNAPhe: Differing Views from Different Force Fields

Plant Polypeptide Hormone Systemin Prefers Polyproline II Conformation in Solution

Specificity determinants for the abscisic acid response element

Genome wide gene expression regulation by HIP1 Protein Interactor, HIPPI: prediction and validation

Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N 1-methylpseudouridine within RNA duplexes

Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and 1-methylpseudouridine within RNA duplexes

Predicting nearest neighbor free energies of modified RNA with LIE: results for pseudouridine and N1-methylpseudouridine within RNA duplexes

Molecular Dynamics Simulation of the Conformational Preferences of Pseudouridine Derivatives: Improving the Distribution in the Glycosidic Torsion Space

Inosine and its methyl derivatives: Occurrence, biogenesis, and function in RNA

LNA-induced dynamic stability in a therapeutic aptamer: insights from molecular dynamics simulations

Analysis of the interaction of a non-canonical twin half-site of Cyclic AMP-Response Element (CRE) with CRE-binding protein

Ensemble Allosteric Model for the Modified Wobble Hypothesis

Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair

Inclusion of chrysin in β-cyclodextrin nanocavity and its effect on antioxidant potential of chrysin: A spectroscopic and molecular modeling approach

Reparameterizations of the χ Torsion and Lennard-Jones σ Parameters Improve the Conformational Characteristics of Modified Uridines

Probing the functional conformations of an atypical proline-rich fusion peptide

Reparameterizations of the ? Torsion and Lennard-Jones s Parameters Improve the Conformational Characteristics of Modified Uridines

Conformational Preferences of Modified Uridines: Comparison of AMBER Derived Force Fields

Arabidopsis thaliana regulatory element analyzer

Effect of Inactivating Mutations on Peptide Conformational Ensembles: The Plant Polypeptide Hormone Systemin

Theoretical Analysis of the Excited State Properties of Wybutine: A Natural Probe for Transfer RNA Dynamics

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