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RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-seq datasets

PloS one, 2014-02, Vol.9 (2), p.e89445-e89445

2014

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In Vitro High‐Capacity Assay to Quantify the Clonal Heterogeneity in Trilineage Potential of Mesenchymal Stem Cells Reveals a Complex Hierarchy of Lineage Commitment

Stem cells (Dayton, Ohio), 2010-04, Vol.28 (4), p.788-798

2010

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Differences in gastric carcinoma microenvironment stratify according to EBV infection intensity: implications for possible immune adjuvant therapy

PLoS pathogens, 2013-05, Vol.9 (5), p.e1003341-e1003341

2013

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Genetic Requirements for the Survival of Tubercle Bacilli in Primates

The Journal of infectious diseases, 2010-06, Vol.201 (11), p.1743-1752

2010

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Prognostic significance of cytoplasmic SOX9 in invasive ductal carcinoma and metastatic breast cancer

Experimental biology and medicine (Maywood, N.J.), 2011-02, Vol.236 (2), p.145-155

2011

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Cell-surface expression of neuron-glial antigen 2 (NG2) and melanoma cell adhesion molecule (CD146) in heterogeneous cultures of marrow-derived mesenchymal stem cells

Tissue engineering. Part A, 2013-10, Vol.19 (19-20), p.2253

2013

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Identification of biomarkers for tuberculosis susceptibility via integrated analysis of gene expression and longitudinal clinical data

Frontiers in genetics, 2014-07, Vol.5, p.240-240

2014

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Modeling Methylation Patterns with Long Read Sequencing Data

IEEE/ACM transactions on computational biology and bioinformatics, 2018-07, Vol.15 (4), p.1379-1389

2018

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Modeling, simulation and analysis of methylation profiles from reduced representation bisulfite sequencing experiments

Statistical applications in genetics and molecular biology, 2013-12, Vol.12 (6), p.723-742

2013

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Clonal analysis of the proliferation potential of human bone marrow mesenchymal stem cells as a function of potency

Biotechnology and bioengineering, 2011-11, Vol.108 (11), p.2716-2726

2011

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Decompressive Craniectomy for Elevated Intracranial Pressure and Its Effect on the Cumulative Ischemic Burden and Therapeutic Intensity Levels After Severe Traumatic Brain Injury

Neurosurgery, 2010-06, Vol.66 (6), p.1111-1119

2010

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Adult human mesenchymal stem cells enhance breast tumorigenesis and promote hormone independence

Breast cancer research and treatment, 2010-06, Vol.121 (2), p.293-300

2010

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Serum Cadmium Levels in Pancreatic Cancer Patients from the East Nile Delta Region of Egypt

Environmental health perspectives, 2006-01, Vol.114 (1), p.113-119

2006

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Tumor necrosis factor receptor 1 functions as a tumor suppressor

American journal of physiology: Gastrointestinal and liver physiology, 2012-01, Vol.302 (2), p.G195-G206

2012

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W1743 TNFR1 Signaling Promotes Colon Epithelial Cell Repair Following Injury and Protects Against Progression to Inflammation-Associated Carcinogenesis

Gastroenterology (New York, N.Y. 1943), 2010, Vol.138 (5), p.S-731-S-731

2010

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Modeling Dependence in Methylation Patterns with Application to Ovarian Carcinomas

Statistical Applications in Genetics and Molecular Biology, 2009-01, Vol.8 (1), p.40-27

2009

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TgMAPK1 is a Toxoplasma gondii MAP kinase that hijacks host MKK3 signals to regulate virulence and interferon-γ-mediated nitric oxide production

Experimental parasitology, 2013-07, Vol.134 (3), p.389-399

2013

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A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences

Mathematical biosciences, 2006-02, Vol.199 (2), p.188-215

2006

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Toxoplasma gondii expresses two mitogen-activated protein kinase genes that represent distinct protozoan subfamilies

Journal of molecular evolution, 2007-01, Vol.64 (1), p.4-14

2007

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A sharp error probability estimate for the reconstruction of phylogenetic quartets by the four-point method

Journal of computational biology, 2009-03, Vol.16 (3), p.443

2009

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The Real Student-Loan Scandal: Undue Hardship Discharge Litigation

The American bankruptcy law journal, 2009-01, Vol.83 (1), p.179

2009

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High-capacity assay to quantify the clonal heterogeneity in potency of mesenchymal stem cells

BMC proceedings, 2011-11, Vol.5 Suppl 8 (S8), p.O14-O14, Article O14

2011

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Tumor necrosis factor receptor 1 functions as a tumor suppressor

American journal of physiology: Gastrointestinal and liver physiology, 2012, Vol.65 (1)

2012

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Depletion of nuclear SOX9 impairs differentiation & facilitates growth of invasive ductal breast carcinoma

The FASEB journal, 2010-04, Vol.24 (S1), p.754.4-754.4

2010

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Differences in Gastric Carcinoma Microenvironment Stratify According to EBV Infection Intensity: Implications for Possible Immune Adjuvant Therapy: e1003341

PLoS pathogens, 2013-05, Vol.9 (5)

2013

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RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-seq datasets

In Vitro High‐Capacity Assay to Quantify the Clonal Heterogeneity in Trilineage Potential of Mesenchymal Stem Cells Reveals a Complex Hierarchy of Lineage Commitment

Differences in gastric carcinoma microenvironment stratify according to EBV infection intensity: implications for possible immune adjuvant therapy

Genetic Requirements for the Survival of Tubercle Bacilli in Primates

Prognostic significance of cytoplasmic SOX9 in invasive ductal carcinoma and metastatic breast cancer

Cell-surface expression of neuron-glial antigen 2 (NG2) and melanoma cell adhesion molecule (CD146) in heterogeneous cultures of marrow-derived mesenchymal stem cells

Identification of biomarkers for tuberculosis susceptibility via integrated analysis of gene expression and longitudinal clinical data

Modeling Methylation Patterns with Long Read Sequencing Data

Modeling, simulation and analysis of methylation profiles from reduced representation bisulfite sequencing experiments

Clonal analysis of the proliferation potential of human bone marrow mesenchymal stem cells as a function of potency

Decompressive Craniectomy for Elevated Intracranial Pressure and Its Effect on the Cumulative Ischemic Burden and Therapeutic Intensity Levels After Severe Traumatic Brain Injury

Adult human mesenchymal stem cells enhance breast tumorigenesis and promote hormone independence

Serum Cadmium Levels in Pancreatic Cancer Patients from the East Nile Delta Region of Egypt

Tumor necrosis factor receptor 1 functions as a tumor suppressor

W1743 TNFR1 Signaling Promotes Colon Epithelial Cell Repair Following Injury and Protects Against Progression to Inflammation-Associated Carcinogenesis

Modeling Dependence in Methylation Patterns with Application to Ovarian Carcinomas

TgMAPK1 is a Toxoplasma gondii MAP kinase that hijacks host MKK3 signals to regulate virulence and interferon-γ-mediated nitric oxide production

A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences

Toxoplasma gondii expresses two mitogen-activated protein kinase genes that represent distinct protozoan subfamilies

A sharp error probability estimate for the reconstruction of phylogenetic quartets by the four-point method

The Real Student-Loan Scandal: Undue Hardship Discharge Litigation

High-capacity assay to quantify the clonal heterogeneity in potency of mesenchymal stem cells

Tumor necrosis factor receptor 1 functions as a tumor suppressor

Depletion of nuclear SOX9 impairs differentiation & facilitates growth of invasive ductal breast carcinoma

Differences in Gastric Carcinoma Microenvironment Stratify According to EBV Infection Intensity: Implications for Possible Immune Adjuvant Therapy: e1003341

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