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TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells

Cancer research (Chicago, Ill.), 2017-11, Vol.77 (21), p.e108-e110

2017

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TIMER2.0 for analysis of tumor-infiltrating immune cells

Nucleic acids research, 2020-07, Vol.48 (W1), p.W509-W514

2020

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Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis

Nucleic acids research, 2019-01, Vol.47 (D1), p.D729-D735

2019

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CEAS: cis-regulatory element annotation system

Bioinformatics, 2009-10, Vol.25 (19), p.2605-2606

2009

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Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response

Nature medicine, 2018-10, Vol.24 (10), p.1550-1558

2018

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Acetylation-dependent regulation of PD-L1 nuclear translocation dictates the efficacy of anti-PD-1 immunotherapy

Nature cell biology, 2020-09, Vol.22 (9), p.1064-1075

2020

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Large-scale public data reuse to model immunotherapy response and resistance

Genome medicine, 2020-02, Vol.12 (1), p.21-21, Article 21

2020

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Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

Genome Biology, 2016-08, Vol.17 (1), p.174-174, Article 174

2016

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Targeting Androgen Receptor in Estrogen Receptor-Negative Breast Cancer

Cancer cell, 2011-07, Vol.20 (1), p.119-131

2011

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Integrative analysis of pooled CRISPR genetic screens using MAGeCKFlute

Nature protocols, 2019-03, Vol.14 (3), p.756-780

2019

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Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model

PLoS computational biology, 2015-09, Vol.11 (9), p.e1004498-e1004498

2015

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Circadian Rhythm Orchestrated by Histone Deacetylase 3 Controls Hepatic Lipid Metabolism

Science (American Association for the Advancement of Science), 2011-03, Vol.331 (6022), p.1315-1319

2011

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GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

Bioinformatics, 2012-11, Vol.28 (21), p.2782-2788

2012

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Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR

Genome Biology, 2015-12, Vol.16 (1), p.281-281, Article 281

2015

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Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

Nucleic acids research, 2017-01, Vol.45 (D1), p.D658-D662

2017

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A major chromatin regulator determines resistance of tumor cells to T cell-mediated killing

Science (American Association for the Advancement of Science), 2018-02, Vol.359 (6377), p.770-775

2018

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Fast alignment and preprocessing of chromatin profiles with Chromap

Nature communications, 2021-11, Vol.12 (1), p.6566-6566, Article 6566

2021

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Sequence determinants of improved CRISPR sgRNA design

Genome research, 2015-08, Vol.25 (8), p.1147-1157

2015

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Revisit linear regression-based deconvolution methods for tumor gene expression data

Genome Biology, 2017-07, Vol.18 (1), p.127-127, Article 127

2017

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Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer

Cancer research (Chicago, Ill.), 2017-11, Vol.77 (21), p.e19-e22

2017

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Chromatin marks identify critical cell types for fine mapping complex trait variants

Nature genetics, 2013-02, Vol.45 (2), p.124-130

2013

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Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data

Genome Biology, 2020-02, Vol.21 (1), p.32-32, Article 32

2020

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A Transcriptional Signature and Common Gene Networks Link Cancer with Lipid Metabolism and Diverse Human Diseases

Cancer cell, 2010-04, Vol.17 (4), p.348-361

2010

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Androgen Receptor Gene Expression in Prostate Cancer Is Directly Suppressed by the Androgen Receptor Through Recruitment of Lysine-Specific Demethylase 1

Cancer cell, 2011-10, Vol.20 (4), p.457-471

2011

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Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer

Nature communications, 2016-03, Vol.7 (1), p.10982-10982, Article 10982

2016

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TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells

TIMER2.0 for analysis of tumor-infiltrating immune cells

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis

CEAS: cis-regulatory element annotation system

Signatures of T cell dysfunction and exclusion predict cancer immunotherapy response

Acetylation-dependent regulation of PD-L1 nuclear translocation dictates the efficacy of anti-PD-1 immunotherapy

Large-scale public data reuse to model immunotherapy response and resistance

Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

Targeting Androgen Receptor in Estrogen Receptor-Negative Breast Cancer

Integrative analysis of pooled CRISPR genetic screens using MAGeCKFlute

Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model

Circadian Rhythm Orchestrated by Histone Deacetylase 3 Controls Hepatic Lipid Metabolism

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse

A major chromatin regulator determines resistance of tumor cells to T cell-mediated killing

Fast alignment and preprocessing of chromatin profiles with Chromap

Sequence determinants of improved CRISPR sgRNA design

Revisit linear regression-based deconvolution methods for tumor gene expression data

Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer

Chromatin marks identify critical cell types for fine mapping complex trait variants

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data

A Transcriptional Signature and Common Gene Networks Link Cancer with Lipid Metabolism and Diverse Human Diseases

Androgen Receptor Gene Expression in Prostate Cancer Is Directly Suppressed by the Androgen Receptor Through Recruitment of Lysine-Specific Demethylase 1

Integrative analyses reveal a long noncoding RNA-mediated sponge regulatory network in prostate cancer

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