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Learning from Co-expression Networks: Possibilities and Challenges

Frontiers in plant science, 2016-04, Vol.7, p.444-444

2016

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Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

Nature communications, 2022-06, Vol.13 (1), p.3228-3228, Article 3228

2022

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Dissecting the Genomic Diversification of Late Embryogenesis Abundant (LEA) Protein Gene Families in Plants

Genome biology and evolution, 2019-02, Vol.11 (2), p.459-471

2019

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A guided network estimation approach using multi-omic information

BMC bioinformatics, 2024-05, Vol.25 (1), p.202-202, Article 202

2024

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Metabolite profiling and associated gene expression reveal two metabolic shifts during the seed-to-seedling transition in Arabidopsis thaliana

Plant molecular biology, 2017-11, Vol.95 (4-5), p.481-496

2017

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Induction of desiccation tolerance in desiccation sensitive Citrus limon seeds

Journal of integrative plant biology, 2019-05, Vol.61 (5), p.624-638

2019

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Identification of Reference Genes for RT-qPCR Expression Analysis in Arabidopsis and Tomato Seeds

Plant and cell physiology, 2012-01, Vol.53 (1), p.28-37

2012

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Gibberellin Promotes Sweetpotato Root Vascular Lignification and Reduces Storage-Root Formation

Frontiers in plant science, 2019-11, Vol.10, p.1320-1320

2019

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Abscisic acid (ABA) sensitivity regulates desiccation tolerance in germinated Arabidopsis seeds

The New phytologist, 2014-07, Vol.203 (1), p.81-93

2014

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A Predictive Coexpression Network Identifies Novel Genes Controlling the Seed-to-Seedling Phase Transition in Arabidopsis thaliana

Plant physiology (Bethesda), 2016-04, Vol.170 (4), p.2218-2231

2016

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Acquisition and loss of desiccation tolerance in seeds: from experimental model to biological relevance

Planta, 2015-03, Vol.241 (3), p.563-577

2015

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germinator: a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination

The Plant journal : for cell and molecular biology, 2010-04, Vol.62 (1), p.148-159

2010

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Proximal and Distal Parts of Sweetpotato Adventitious Roots Display Differences in Root Architecture, Lignin, and Starch Metabolism and Their Developmental Fates

Frontiers in plant science, 2021-01, Vol.11, p.609923-609923

2021

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Characterization of and genetic variation for tomato seed thermo-inhibition and thermo-dormancy

BMC plant biology, 2018-10, Vol.18 (1), p.229-229, Article 229

2018

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The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome

PloS one, 2011-12, Vol.6 (12), p.e29123

2011

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Low Salicylic Acid Level Improves Pollen Development Under Long-Term Mild Heat Conditions in Tomato

Frontiers in plant science, 2022-04, Vol.13, p.828743-828743

2022

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Structural Plasticity of Intrinsically Disordered LEA Proteins from Xerophyta schlechteri Provides Protection In Vitro and In Vivo

Frontiers in plant science, 2019-10, Vol.10, p.1272-1272

2019

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Loss of viability during dehydration of Araucaria angustifolia (Bertol.) Kuntze seeds is associated with specific changes in gene expression

Trees (Berlin, West), 2021-12, Vol.35 (6), p.2087-2104

2021

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A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds

Planta, 2015-08, Vol.242 (2), p.435-449

2015

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Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure

Plant and cell physiology, 2018-03, Vol.59 (3), p.469-486

2018

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High-Throughput Scoring of Seed Germination

Methods in molecular biology (Clifton, N.J.), 2017-01, Vol.1497, p.57

2017

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Resilience of Ricinus communis L. to high temperatures during germination and seedling growth resulting from efficient superoxide dismutase modulation

Revista brasileira de botânica, 2024, Vol.47 (2), p.311-324

2024

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Role for Arabidopsis PLC7 in Stomatal Movement, Seed Mucilage Attachment, and Leaf Serration

Frontiers in plant science, 2018-11, Vol.9, p.1721-1721

2018

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Exploring the natural variation for seedling traits and their link with seed dimensions in tomato

PloS one, 2012-08, Vol.7 (8), p.e43991-e43991

2012

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Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Nature plants, 2020-01, Vol.6 (1), p.13-21

2020

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Learning from Co-expression Networks: Possibilities and Challenges

Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

Dissecting the Genomic Diversification of Late Embryogenesis Abundant (LEA) Protein Gene Families in Plants

A guided network estimation approach using multi-omic information

Metabolite profiling and associated gene expression reveal two metabolic shifts during the seed-to-seedling transition in Arabidopsis thaliana

Induction of desiccation tolerance in desiccation sensitive Citrus limon seeds

Identification of Reference Genes for RT-qPCR Expression Analysis in Arabidopsis and Tomato Seeds

Gibberellin Promotes Sweetpotato Root Vascular Lignification and Reduces Storage-Root Formation

Abscisic acid (ABA) sensitivity regulates desiccation tolerance in germinated Arabidopsis seeds

A Predictive Coexpression Network Identifies Novel Genes Controlling the Seed-to-Seedling Phase Transition in Arabidopsis thaliana

Acquisition and loss of desiccation tolerance in seeds: from experimental model to biological relevance

germinator: a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination

Proximal and Distal Parts of Sweetpotato Adventitious Roots Display Differences in Root Architecture, Lignin, and Starch Metabolism and Their Developmental Fates

Characterization of and genetic variation for tomato seed thermo-inhibition and thermo-dormancy

The re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds and its associated transcriptome

Low Salicylic Acid Level Improves Pollen Development Under Long-Term Mild Heat Conditions in Tomato

Structural Plasticity of Intrinsically Disordered LEA Proteins from Xerophyta schlechteri Provides Protection In Vitro and In Vivo

Loss of viability during dehydration of Araucaria angustifolia (Bertol.) Kuntze seeds is associated with specific changes in gene expression

A gene co-expression network predicts functional genes controlling the re-establishment of desiccation tolerance in germinated Arabidopsis thaliana seeds

Arabidopsis Phospholipase C3 is Involved in Lateral Root Initiation and ABA Responses in Seed Germination and Stomatal Closure

High-Throughput Scoring of Seed Germination

Resilience of Ricinus communis L. to high temperatures during germination and seedling growth resulting from efficient superoxide dismutase modulation

Role for Arabidopsis PLC7 in Stomatal Movement, Seed Mucilage Attachment, and Leaf Serration

Exploring the natural variation for seedling traits and their link with seed dimensions in tomato

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

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