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Tara Oceans: towards global ocean ecosystems biology

Nature reviews. Microbiology, 2020-08, Vol.18 (8), p.428-445

2020

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In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba

Proceedings of the National Academy of Sciences - PNAS, 2015-09, Vol.112 (38), p.E5327-E5335

2015

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The Ocean Gene Atlas: exploring the biogeography of plankton genes online

Nucleic acids research, 2018-07, Vol.46 (W1), p.W289-W295

2018

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Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology

Proceedings of the National Academy of Sciences - PNAS, 2014-03, Vol.111 (11), p.4274-4279

2014

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Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective

International journal of molecular sciences, 2021-11, Vol.22 (21), p.11311

2021

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Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

Proceedings of the National Academy of Sciences - PNAS, 2013-06, Vol.110 (26), p.10800-10805

2013

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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Cell genomics, 2022-05, Vol.2 (5), p.100123, Article 100123

2022

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mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

Genome research, 2010-05, Vol.20 (5), p.664-674

2010

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Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

The ISME Journal, 2015-06, Vol.9 (6), p.1365-1377

2015

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The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

PLoS genetics, 2008-09, Vol.4 (9), p.e1000185-e1000185

2008

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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

The ISME Journal, 2016-05, Vol.10 (5), p.1134-1146

2016

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A Single Banana Streak Virus Integration Event in the Banana Genome as the Origin of Infectious Endogenous Pararetrovirus

Journal of Virology, 2008-07, Vol.82 (13), p.6697-6710

2008

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Brucella microti: the genome sequence of an emerging pathogen

BMC genomics, 2009-08, Vol.10 (1), p.352-352

2009

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The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella

BMC evolutionary biology, 2011-07, Vol.11 (1), p.200, Article 200

2011

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Computational approaches to identify promoters and cis-regulatory elements in plant genomes

Plant physiology (Bethesda), 2003-07, Vol.132 (3), p.1162-1176

2003

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A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes

Journal of computational biology, 2002-01, Vol.9 (2), p.447-464

2002

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Insights into the Musa genome: syntenic relationships to rice and between Musa species

BMC genomics, 2008-01, Vol.9 (1), p.58-58, Article 58

2008

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Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes

Science (American Association for the Advancement of Science), 2013-07, Vol.341 (6143), p.281-286

2013

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The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms

Molecular ecology resources, 2021-05, Vol.21 (4), p.1347-1358

2021

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Phylogeny.fr: robust phylogenetic analysis for the non-specialist

Nucleic acids research, 2008-07, Vol.36 (Web Server issue), p.W465-W469

2008

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PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

Nucleic acids research, 2002-01, Vol.30 (1), p.325-327

2002

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The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes

Nucleic acids research, 2022-07, Vol.50 (W1), p.W516-W526

2022

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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Global biogeochemical cycles, 2019-03, Vol.33 (3), p.391-419

2019

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Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA

Nature Computational Science, 2024-02, Vol.4 (2), p.104-109

2024

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Effect of auxin, cytokinin, and sucrose on cell cycle gene expression in Arabidopsis thaliana cell suspension cultures

Plant cell, tissue and organ culture, 2002-05, Vol.69 (2), p.167-176

2002

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Tara Oceans: towards global ocean ecosystems biology

In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba

The Ocean Gene Atlas: exploring the biogeography of plankton genes online

Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology

Bioluminescence and Photoreception in Unicellular Organisms: Light-Signalling in a Bio-Communication Perspective

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton

The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii

Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

A Single Banana Streak Virus Integration Event in the Banana Genome as the Origin of Infectious Endogenous Pararetrovirus

Brucella microti: the genome sequence of an emerging pathogen

The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella

Computational approaches to identify promoters and cis-regulatory elements in plant genomes

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes

Insights into the Musa genome: syntenic relationships to rice and between Musa species

Pandoraviruses: Amoeba Viruses with Genomes Up to 2.5 Mb Reaching That of Parasitic Eukaryotes

The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences

The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes

Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA

Effect of auxin, cytokinin, and sucrose on cell cycle gene expression in Arabidopsis thaliana cell suspension cultures

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