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ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping

Microbial genomics, 2018-07, Vol.4 (7)

2018

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Capturing the mutational landscape of the beta-lactamase TEM-1

Proceedings of the National Academy of Sciences - PNAS, 2013-08, Vol.110 (32), p.13067-13072

2013

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The Evolution of Epistasis and Its Links With Genetic Robustness, Complexity and Drift in a Phenotypic Model of Adaptation

Genetics (Austin), 2009-05, Vol.182 (1), p.277-293

2009

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Mutators and Sex in Bacteria: Conflict between Adaptive Strategies

Proceedings of the National Academy of Sciences - PNAS, 2000-09, Vol.97 (19), p.10465-10470

2000

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Online analysis of in vitro resistance to antimalarial drugs through nonlinear regression

Computer methods and programs in biomedicine, 2011-10, Vol.104 (1), p.10-18

2011

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Fitness, Stress Resistance, and Extraintestinal Virulence in Escherichia coli

Infection and Immunity, 2013-08, Vol.81 (8), p.2733-2742

2013

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Glutathione peroxidase-1 gene ( GPX1 ) variants, oxidative stress and risk of kidney complications in people with type 1 diabetes

Metabolism, clinical and experimental, 2016-02, Vol.65 (2), p.12-19

2016

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High-Throughput Analysis of Antimalarial Susceptibility Data by the WorldWide Antimalarial Resistance Network (WWARN) In Vitro Analysis and Reporting Tool

Antimicrobial Agents and Chemotherapy, 2013-07, Vol.57 (7), p.3121-3130

2013

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The emergence of complexity and restricted pleiotropy in adapting networks

BMC evolutionary biology, 2011-11, Vol.11, p.326

2011

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Complete Nucleotide Sequence of Plasmid pTN48, Encoding the CTX-M-14 Extended-Spectrum β-Lactamase from an Escherichia coli O102-ST405 Strain

Antimicrobial Agents and Chemotherapy, 2011-03, Vol.55 (3), p.1270-1273

2011

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Mutators, Population Size, Adaptive Landscape and the Adaptation of Asexual Populations of Bacteria

Genetics (Austin), 1999-06, Vol.152 (2), p.485-493

1999

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Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of blaCTX-M Gene-Bearing Plasmids in Escherichia coli

Antimicrobial agents and chemotherapy, 2019-09, Vol.63 (10)

2019

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PFIM 4.0, an extended R program for design evaluation and optimization in nonlinear mixed-effect models

Computer methods and programs in biomedicine, 2018-03, Vol.156, p.217-229

2018

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Flux, toxicity, and expression costs generate complex genetic interactions in a metabolic pathway

Science advances, 2020-06, Vol.6 (23), p.eabb2236-eabb2236

2020

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Plasma extracellular superoxide dismutase concentration, allelic variations in the SOD3 gene and risk of myocardial infarction and all-cause mortality in people with type 1 and type 2 diabetes

Cardiovascular diabetology, 2015-01, Vol.14 (1), p.845-845, Article 845

2015

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Genotype–phenotype correlations in fetuses and neonates with autosomal recessive polycystic kidney disease

Kidney international, 2010-02, Vol.77 (4), p.350-358

2010

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Benefits of a new Metropolis–Hasting based algorithm, in non-linear regression for estimation of ex vivo antimalarial sensitivity in patients infected with two strains

Computers in biology and medicine, 2014-12, Vol.55, p.16-25

2014

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Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of bla CTX-M Gene-Bearing Plasmids in Escherichia coli

Antimicrobial agents and chemotherapy, 2019-10, Vol.63 (10)

2019

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Advantage of the F2A1B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of bla(CTX-M )Gene-Bearing Plasmids in Escherichia coli

Antimicrobial agents and chemotherapy, 2019, Vol.63 (10), p.e01130-19

2019

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Selection-Based Estimates of Complexity Unravel Some Mechanisms and Selective Pressures Underlying the Evolution of Complexity in Artificial Networks

Advances in Network Complexity, 2013, p.41-61

2013

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Benefits of a new Metropolis-Hasting based algorithm, in non-linear regression for estimation ofex vivoantimalarial sensitivity in patients infected with two strains

Computers in biology and medicine, 2014-12, Vol.55, p.16

2014

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ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping

Capturing the mutational landscape of the beta-lactamase TEM-1

The Evolution of Epistasis and Its Links With Genetic Robustness, Complexity and Drift in a Phenotypic Model of Adaptation

Mutators and Sex in Bacteria: Conflict between Adaptive Strategies

Online analysis of in vitro resistance to antimalarial drugs through nonlinear regression

Fitness, Stress Resistance, and Extraintestinal Virulence in Escherichia coli

Glutathione peroxidase-1 gene ( GPX1 ) variants, oxidative stress and risk of kidney complications in people with type 1 diabetes

High-Throughput Analysis of Antimalarial Susceptibility Data by the WorldWide Antimalarial Resistance Network (WWARN) In Vitro Analysis and Reporting Tool

Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections

The emergence of complexity and restricted pleiotropy in adapting networks

Complete Nucleotide Sequence of Plasmid pTN48, Encoding the CTX-M-14 Extended-Spectrum β-Lactamase from an Escherichia coli O102-ST405 Strain

Mutators, Population Size, Adaptive Landscape and the Adaptation of Asexual Populations of Bacteria

Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of blaCTX-M Gene-Bearing Plasmids in Escherichia coli

PFIM 4.0, an extended R program for design evaluation and optimization in nonlinear mixed-effect models

Flux, toxicity, and expression costs generate complex genetic interactions in a metabolic pathway

Plasma extracellular superoxide dismutase concentration, allelic variations in the SOD3 gene and risk of myocardial infarction and all-cause mortality in people with type 1 and type 2 diabetes

Genotype–phenotype correlations in fetuses and neonates with autosomal recessive polycystic kidney disease

Benefits of a new Metropolis–Hasting based algorithm, in non-linear regression for estimation of ex vivo antimalarial sensitivity in patients infected with two strains

Advantage of the F2:A1:B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of bla CTX-M Gene-Bearing Plasmids in Escherichia coli

Advantage of the F2A1B- IncF Pandemic Plasmid over IncC Plasmids in In Vitro Acquisition and Evolution of bla(CTX-M )Gene-Bearing Plasmids in Escherichia coli

Selection-Based Estimates of Complexity Unravel Some Mechanisms and Selective Pressures Underlying the Evolution of Complexity in Artificial Networks

Ten months of temporal variation in the clinical journey of hospitalised patients with COVID-19: An observational cohort

Benefits of a new Metropolis-Hasting based algorithm, in non-linear regression for estimation ofex vivoantimalarial sensitivity in patients infected with two strains

Correction: Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Escherichia coli Extraintestinal Infections

Correction: Molecular and Evolutionary Bases of Within-Patient Genotypic and Phenotypic Diversity in Extraintestinal Infections

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