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A circadian gene expression atlas in mammals: Implications for biology and medicine

Proceedings of the National Academy of Sciences - PNAS, 2014-11, Vol.111 (45), p.16219-16224

2014

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CircaDB: a database of mammalian circadian gene expression profiles

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D1009-D1013

2013

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G1/S cell cycle regulators mediate effects of circadian dysregulation on tumor growth and provide targets for timed anticancer treatment

PLoS biology, 2019-04, Vol.17 (4), p.e3000228-e3000228

2019

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A circadian clock regulates efflux by the blood-brain barrier in mice and human cells

Nature communications, 2021-01, Vol.12 (1), p.617-617, Article 617

2021

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A new view of transcriptome complexity and regulation through the lens of local splicing variations

eLife, 2016-02, Vol.5, p.e11752

2016

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Ribosome profiling reveals an important role for translational control in circadian gene expression

Genome research, 2015-12, Vol.25 (12), p.1836-1847

2015

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Comparative evaluation of full-length isoform quantification from RNA-Seq

BMC bioinformatics, 2021-05, Vol.22 (1), p.1-266, Article 266

2021

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Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank

Nature communications, 2023-08, Vol.14 (1), p.5172-10, Article 5172

2023

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Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)

Bioinformatics, 2011-09, Vol.27 (18), p.2518-2528

2011

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Characterization of the genome and silk-gland transcriptomes of Darwin's bark spider (Caerostris darwini)

PloS one, 2022-06, Vol.17 (6), p.e0268660-e0268660

2022

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RNA splicing analysis using heterogeneous and large RNA-seq datasets

Nature communications, 2023-03, Vol.14 (1), p.1230-1230, Article 1230

2023

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A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

BMC genomics, 2017-08, Vol.18 (1), p.602-602, Article 602

2017

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Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues

eLife, 2018-05, Vol.7

2018

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MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis

Nature communications, 2021-06, Vol.12 (1), p.3353-3353, Article 3353

2021

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CAMPAREE: a robust and configurable RNA expression simulator

BMC genomics, 2021-09, Vol.22 (1), p.692-692, Article 692

2021

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Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input

Scientific reports, 2019-09, Vol.9 (1), p.13477-10, Article 13477

2019

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Dietary challenges differentially affect activity and sleep/wake behavior in mus musculus: Isolating independent associations with diet/energy balance and body weight

PloS one, 2018-05, Vol.13 (5), p.e0196743

2018

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Deep phenotyping of the lipidomic response in COVID‐19 and non‐COVID‐19 sepsis

Clinical and translational medicine, 2023-11, Vol.13 (11), p.e1440-n/a

2023

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The Nephila clavipes genome highlights the diversity of spider silk genes and their complex expression

Nature genetics, 2017-06, Vol.49 (6), p.895-903

2017

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Challenges and best practices in omics benchmarking

Nature reviews. Genetics, 2024-05, Vol.25 (5), p.326-339

2024

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Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data

Bioinformatics (Oxford, England), 2015-12, Vol.31 (24), p.3938-3945

2015

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Time-specific associations of wearable sensor-based cardiovascular and behavioral readouts with disease phenotypes in the outpatient setting of the Chronic Renal Insufficiency Cohort

Digital health, 2022, Vol.8, p.20552076221107903-20552076221107903

2022

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IVT-seq reveals extreme bias in RNA sequencing

Genome biology, 2014-06, Vol.15 (6), p.R86-R86, Article R86

2014

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Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates

Bioinformatics, 2018-05, Vol.34 (9), p.1488-1497

2018

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Sexual dimorphism in the response to chronic circadian misalignment on a high-fat diet

Science translational medicine, 2023-05, Vol.15 (696), p.eabo2022

2023

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A circadian gene expression atlas in mammals: Implications for biology and medicine

CircaDB: a database of mammalian circadian gene expression profiles

G1/S cell cycle regulators mediate effects of circadian dysregulation on tumor growth and provide targets for timed anticancer treatment

A circadian clock regulates efflux by the blood-brain barrier in mice and human cells

A new view of transcriptome complexity and regulation through the lens of local splicing variations

Ribosome profiling reveals an important role for translational control in circadian gene expression

Comparative evaluation of full-length isoform quantification from RNA-Seq

Diurnal rhythms of wrist temperature are associated with future disease risk in the UK Biobank

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)

Characterization of the genome and silk-gland transcriptomes of Darwin's bark spider (Caerostris darwini)

RNA splicing analysis using heterogeneous and large RNA-seq datasets

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression

Transcriptional profiling reveals extraordinary diversity among skeletal muscle tissues

MOCCASIN: a method for correcting for known and unknown confounders in RNA splicing analysis

CAMPAREE: a robust and configurable RNA expression simulator

Comparative evaluation of RNA-Seq library preparation methods for strand-specificity and low input

Dietary challenges differentially affect activity and sleep/wake behavior in mus musculus: Isolating independent associations with diet/energy balance and body weight

Deep phenotyping of the lipidomic response in COVID‐19 and non‐COVID‐19 sepsis

The Nephila clavipes genome highlights the diversity of spider silk genes and their complex expression

Challenges and best practices in omics benchmarking

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data

Time-specific associations of wearable sensor-based cardiovascular and behavioral readouts with disease phenotypes in the outpatient setting of the Chronic Renal Insufficiency Cohort

IVT-seq reveals extreme bias in RNA sequencing

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates

Sexual dimorphism in the response to chronic circadian misalignment on a high-fat diet

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