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Quantum Mechanics/Molecular Mechanics Modeling of Photoelectron Spectra: The Carbon 1s Core–Electron Binding Energies of Ethanol–Water Solutions

The journal of physical chemistry. B, 2014-11, Vol.118 (46), p.13217-13225

2014

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Experimental observation of structural phase transition in CsBr clusters

Physical review. B, 2017-01, Vol.95 (4), Article 045402

2017

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Quantum-classical calculations of X-ray photoelectron spectra of polymers—Polymethyl methacrylate revisited

The Journal of chemical physics, 2017-03, Vol.146 (12), p.124902-124902

2017

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Quantum mechanics capacitance molecular mechanics modeling of core-electron binding energies of methanol and methyl nitrite on Ag(111) surface

The Journal of chemical physics, 2016-07, Vol.145 (2), p.024703-024703

2016

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Spin-orbit interaction mediated molecular dissociation

The Journal of chemical physics, 2014-05, Vol.140 (18), p.184304-184304

2014

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Fragmentation of mercury compounds under ultraviolet light irradiation

The Journal of chemical physics, 2015-08, Vol.143 (7), p.074307-074307

2015

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Big data and other challenges in the quest for orthologs

Bioinformatics (Oxford, England), 2014-11, Vol.30 (21), p.2993-2998

2014

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Phylogeny-Aware Alignment with PRANK and PAGAN

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2231, p.17

Löytynoja, Ari

2021

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Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

Science (American Association for the Advancement of Science), 2008-06, Vol.320 (5883), p.1632-1635

2008

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webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser

BMC bioinformatics, 2010-11, Vol.11 (1), p.579-579, Article 579

2010

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Evolutionary Sequence Analysis and Visualization with Wasabi

Methods in molecular biology (Clifton, N.J.), 2021, Vol.2231, p.225

2021

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Phylogeny-aware alignment with PRANK

Methods in molecular biology (Clifton, N.J.), 2014, Vol.1079, p.155

Löytynoja, Ari

2014

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An Algorithm for Progressive Multiple Alignment of Sequences with Insertions

Proceedings of the National Academy of Sciences - PNAS, 2005-07, Vol.102 (30), p.10557-10562

2005

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Wasabi: An Integrated Platform for Evolutionary Sequence Analysis and Data Visualization

Molecular biology and evolution, 2016-04, Vol.33 (4), p.1126-1130

2016

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Secondary Contact, Introgressive Hybridization, and Genome Stabilization in Sticklebacks

Molecular biology and evolution, 2024-02, Vol.41 (2)

2024

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An inducible genome editing system for plants

Nature plants, 2020-07, Vol.6 (7), p.766

2020

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Genetic population structure constrains local adaptation in sticklebacks

Molecular ecology, 2021-05, Vol.30 (9), p.1946-1961

2021

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Analysis of population structure and genetic diversity in low-variance Saimaa ringed seals using low-coverage whole-genome sequence data

STAR protocols, 2023-12, Vol.4 (4), p.102567-102567, Article 102567

2023

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Complex population history affects admixture analyses in nine‐spined sticklebacks

Molecular ecology, 2022-10, Vol.31 (20), p.5386-5401

2022

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Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks

Proceedings of the National Academy of Sciences - PNAS, 2015-01, Vol.112 (2), p.E99-E100

2015

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Short template switch events explain mutation clusters in the human genome

Genome research, 2017-06, Vol.27 (6), p.1039

2017

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A hidden Markov model for progressive multiple alignment

Bioinformatics, 2003-08, Vol.19 (12), p.1505-1513

2003

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Predicting recombination frequency from map distance

Heredity, 2023-03, Vol.130 (3), p.114-121

2023

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A model of evolution and structure for multiple sequence alignment

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2008-12, Vol.363 (1512), p.3913

2008

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Mechanistic insights into the evolution of DUF26-containing proteins in land plants

Communications biology, 2019-02, Vol.2 (1), p.56, Article 56

2019

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Quantum Mechanics/Molecular Mechanics Modeling of Photoelectron Spectra: The Carbon 1s Core–Electron Binding Energies of Ethanol–Water Solutions

Experimental observation of structural phase transition in CsBr clusters

Quantum-classical calculations of X-ray photoelectron spectra of polymers—Polymethyl methacrylate revisited

Quantum mechanics capacitance molecular mechanics modeling of core-electron binding energies of methanol and methyl nitrite on Ag(111) surface

Spin-orbit interaction mediated molecular dissociation

Fragmentation of mercury compounds under ultraviolet light irradiation

Big data and other challenges in the quest for orthologs

Phylogeny-Aware Alignment with PRANK and PAGAN

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser

Evolutionary Sequence Analysis and Visualization with Wasabi

Phylogeny-aware alignment with PRANK

An Algorithm for Progressive Multiple Alignment of Sequences with Insertions

Wasabi: An Integrated Platform for Evolutionary Sequence Analysis and Data Visualization

Secondary Contact, Introgressive Hybridization, and Genome Stabilization in Sticklebacks

An inducible genome editing system for plants

Genetic population structure constrains local adaptation in sticklebacks

Analysis of population structure and genetic diversity in low-variance Saimaa ringed seals using low-coverage whole-genome sequence data

Complex population history affects admixture analyses in nine‐spined sticklebacks

Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks

Short template switch events explain mutation clusters in the human genome

A hidden Markov model for progressive multiple alignment

Predicting recombination frequency from map distance

A model of evolution and structure for multiple sequence alignment

Mechanistic insights into the evolution of DUF26-containing proteins in land plants

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