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Visualizing the structure of RNA-seq expression data using grade of membership models

PLoS genetics, 2017-03, Vol.13 (3), p.e1006599-e1006599

2017

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Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements

Nature genetics, 2020-12, Vol.52 (12), p.1346-1354

2020

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Remote Sensing in Agriculture—Accomplishments, Limitations, and Opportunities

Remote sensing (Basel, Switzerland), 2020-11, Vol.12 (22), p.3783

2020

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A new sequence logo plot to highlight enrichment and depletion

BMC bioinformatics, 2018-12, Vol.19 (1), p.473-473, Article 473

2018

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Polygenic architecture of rare coding variation across 394,783 exomes

Nature (London), 2023-02, Vol.614 (7948), p.492-499

2023

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Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity

Nature genetics, 2022-06, Vol.54 (6), p.827-836

2022

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Regional influences on community structure across the tropical-temperate divide

Nature communications, 2019-06, Vol.10 (1), p.2646-8, Article 2646

2019

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Extensive Recovery of Embryonic Enhancer and Gene Memory Stored in Hypomethylated Enhancer DNA

Molecular cell, 2019-05, Vol.74 (3), p.542-554.e5

2019

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Sugarcane Mosaic Virus Detection in Maize Using UAS Multispectral Imagery

Remote sensing (Basel, Switzerland), 2024-09, Vol.16 (17), p.3296

2024

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Assessment of the Spatial and Temporal Patterns of Cover Crops Using Remote Sensing

Remote sensing (Basel, Switzerland), 2021-07, Vol.13 (14), p.2689

2021

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SAIGE-GENE+ improves the efficiency and accuracy of set-based rare variant association tests

Nature genetics, 2022-10, Vol.54 (10), p.1466-1469

2022

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Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics

Nature genetics, 2022-10, Vol.54 (10), p.1479-1492

2022

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Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

Nature genetics, 2022-10, Vol.54 (10), p.1572-1580

2022

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Evaluating the informativeness of deep learning annotations for human complex diseases

Nature communications, 2020-09, Vol.11 (1), p.4703-4703, Article 4703

2020

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Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types

Nature communications, 2024-01, Vol.15 (1), p.563-11, Article 563

2024

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Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Nature genetics, 2024-04, Vol.56 (4), p.627-636

2024

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Verification of serialising instructions for security against transient execution attacks

Chronic diseases and translational medicine, 2023-07, Vol.17 (3-4), p.127-140

2023

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Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

Genome research, 2020-04, Vol.30 (4), p.611-621

2020

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Author Correction: Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Nature genetics, 2024-06, Vol.56 (6), p.1319-1319

2024

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Agricultural productivity and water quality tradeoffs of winter cover crops at a landscape scale through the lens of remote sensing

Journal of environmental management, 2023-03, Vol.330, p.117212, Article 117212

2023

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Weight reduction and the impact on apnea-hypopnea index: A systematic meta-analysis

Sleep medicine, 2024-09, Vol.121, p.26-31

2024

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Dispersal syndromes drive the formation of biogeographical regions, illustrated by the case of Wallace’s Line

Global ecology and biogeography, 2021-03, Vol.30 (3), p.685-696

2021

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Inference and visualization of DNA damage patterns using a grade of membership model

Bioinformatics, 2019-04, Vol.35 (8), p.1292-1298

2019

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Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease

Nature communications, 2020-12, Vol.11 (1), p.6258-6258, Article 6258

2020

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CRISPR screening uncovers a long-range enhancer for ONECUT1 in pancreatic differentiation and links a diabetes risk variant

Cell reports (Cambridge), 2024-08, Vol.43 (8), p.114640-114640, Article 114640

2024

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Visualizing the structure of RNA-seq expression data using grade of membership models

Improving the trans-ancestry portability of polygenic risk scores by prioritizing variants in predicted cell-type-specific regulatory elements

Remote Sensing in Agriculture—Accomplishments, Limitations, and Opportunities

A new sequence logo plot to highlight enrichment and depletion

Polygenic architecture of rare coding variation across 394,783 exomes

Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity

Regional influences on community structure across the tropical-temperate divide

Extensive Recovery of Embryonic Enhancer and Gene Memory Stored in Hypomethylated Enhancer DNA

Sugarcane Mosaic Virus Detection in Maize Using UAS Multispectral Imagery

Assessment of the Spatial and Temporal Patterns of Cover Crops Using Remote Sensing

SAIGE-GENE+ improves the efficiency and accuracy of set-based rare variant association tests

Identifying disease-critical cell types and cellular processes by integrating single-cell RNA-sequencing and human genetics

Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

Evaluating the informativeness of deep learning annotations for human complex diseases

Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types

Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Verification of serialising instructions for security against transient execution attacks

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

Author Correction: Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Agricultural productivity and water quality tradeoffs of winter cover crops at a landscape scale through the lens of remote sensing

Weight reduction and the impact on apnea-hypopnea index: A systematic meta-analysis

Dispersal syndromes drive the formation of biogeographical regions, illustrated by the case of Wallace’s Line

Inference and visualization of DNA damage patterns using a grade of membership model

Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease

CRISPR screening uncovers a long-range enhancer for ONECUT1 in pancreatic differentiation and links a diabetes risk variant

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