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A cross-reactive human IgA monoclonal antibody blocks SARS-CoV-2 spike-ACE2 interaction

Nature communications, 2020-08, Vol.11 (1), p.4198-4198, Article 4198

2020

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Crystal Structure of SARS-CoV-2 Main Protease in Complex with the Non-Covalent Inhibitor ML188

Viruses, 2021-01, Vol.13 (2), p.174

2021

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Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity

Nature communications, 2017-04, Vol.8 (1), p.15024-15024, Article 15024

2017

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Structural basis of substrate specificity in human cytidine deaminase family APOBEC3s

The Journal of biological chemistry, 2021-08, Vol.297 (2), p.100909-100909, Article 100909

2021

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NMR and MD studies combined to elucidate inhibitor and water interactions of HIV-1 protease and their modulations with resistance mutations

Journal of biomolecular NMR, 2019-07, Vol.73 (6-7), p.365-374

2019

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Mechanism for APOBEC3G catalytic exclusion of RNA and non-substrate DNA

Nucleic acids research, 2019-08, Vol.47 (14), p.7676-7689

2019

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Molecular and Structural Mechanism of Pan-Genotypic HCV NS3/4A Protease Inhibition by Glecaprevir

ACS chemical biology, 2020-02, Vol.15 (2), p.342-352

2020

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Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions

Scientific reports, 2018-05, Vol.8 (1), p.7511-11, Article 7511

2018

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Hydration Structure and Dynamics of Inhibitor-Bound HIV‑1 Protease

Journal of chemical theory and computation, 2018-05, Vol.14 (5), p.2784-2796

2018

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Elucidating the Substrate Envelope of Enterovirus 68-3C Protease: Structural Basis of Specificity and Potential Resistance

Viruses, 2024-09, Vol.16 (9), p.1419

2024

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Structural basis and distal effects of Gag substrate coevolution in drug resistance to HIV-1 protease

Proceedings of the National Academy of Sciences - PNAS, 2014-11, Vol.111 (45), p.15993-15998

2014

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Introduction: Drug Resistance

Chemical reviews, 2021-03, Vol.121 (6), p.3235-3237

2021

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Crystal Structures of Inhibitor-Bound Main Protease from Delta- and Gamma-Coronaviruses

Viruses, 2023-03, Vol.15 (3), p.781

2023

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Electrostatic Effect of the Ribosomal Surface on Nascent Polypeptide Dynamics

ACS chemical biology, 2013-06, Vol.8 (6), p.1195-1204

2013

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Differential Flap Dynamics in Wild-Type and a Drug Resistant Variant of HIV-1 Protease Revealed by Molecular Dynamics and NMR Relaxation

Journal of chemical theory and computation, 2012-10, Vol.8 (10), p.3452-3462

2012

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Drug Resistance Mutations Alter Dynamics of Inhibitor-Bound HIV‑1 Protease

Journal of chemical theory and computation, 2014-08, Vol.10 (8), p.3438-3448

2014

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Avoiding Drug Resistance by Substrate Envelope-Guided Design: Toward Potent and Robust HCV NS3/4A Protease Inhibitors

mBio, 2020-03, Vol.11 (2)

2020

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Improving Viral Protease Inhibitors to Counter Drug Resistance

Trends in microbiology (Regular ed.), 2016-07, Vol.24 (7), p.547-557

2016

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Structural Determination of the Broadly Reactive Anti-IGHV1-69 Anti-idiotypic Antibody G6 and Its Idiotope

Cell reports (Cambridge), 2017-12, Vol.21 (11), p.3243-3255

2017

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Deciphering Complex Mechanisms of Resistance and Loss of Potency through Coupled Molecular Dynamics and Machine Learning

Journal of chemical theory and computation, 2021-04, Vol.17 (4), p.2054-2064

2021

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Structural and Thermodynamic Basis of Amprenavir/Darunavir and Atazanavir Resistance in HIV-1 Protease with Mutations at Residue 50

Journal of Virology, 2013-04, Vol.87 (8), p.4176-4184

2013

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Deciphering Antifungal Drug Resistance in Pneumocystis jirovecii DHFR with Molecular Dynamics and Machine Learning

Journal of chemical information and modeling, 2021-06, Vol.61 (6), p.2537-2541

2021

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Target-Specific Prediction of Ligand Affinity with Structure-Based Interaction Fingerprints

Journal of chemical information and modeling, 2019-09, Vol.59 (9), p.3679-3691

2019

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T cell epitope engineering: an avian H7N9 influenza vaccine strategy for pandemic preparedness and response

Human vaccines & immunotherapeutics, 2018-09, Vol.14 (9), p.2203-2207

2018

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Viral proteases: Structure, mechanism and inhibition

The Enzymes, 2021, Vol.50, p.301-333

2021

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A cross-reactive human IgA monoclonal antibody blocks SARS-CoV-2 spike-ACE2 interaction

Crystal Structure of SARS-CoV-2 Main Protease in Complex with the Non-Covalent Inhibitor ML188

Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity

Structural basis of substrate specificity in human cytidine deaminase family APOBEC3s

NMR and MD studies combined to elucidate inhibitor and water interactions of HIV-1 protease and their modulations with resistance mutations

Mechanism for APOBEC3G catalytic exclusion of RNA and non-substrate DNA

Molecular and Structural Mechanism of Pan-Genotypic HCV NS3/4A Protease Inhibition by Glecaprevir

Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions

Hydration Structure and Dynamics of Inhibitor-Bound HIV‑1 Protease

Elucidating the Substrate Envelope of Enterovirus 68-3C Protease: Structural Basis of Specificity and Potential Resistance

Structural basis and distal effects of Gag substrate coevolution in drug resistance to HIV-1 protease

Introduction: Drug Resistance

Crystal Structures of Inhibitor-Bound Main Protease from Delta- and Gamma-Coronaviruses

Electrostatic Effect of the Ribosomal Surface on Nascent Polypeptide Dynamics

Differential Flap Dynamics in Wild-Type and a Drug Resistant Variant of HIV-1 Protease Revealed by Molecular Dynamics and NMR Relaxation

Drug Resistance Mutations Alter Dynamics of Inhibitor-Bound HIV‑1 Protease

Avoiding Drug Resistance by Substrate Envelope-Guided Design: Toward Potent and Robust HCV NS3/4A Protease Inhibitors

Improving Viral Protease Inhibitors to Counter Drug Resistance

Structural Determination of the Broadly Reactive Anti-IGHV1-69 Anti-idiotypic Antibody G6 and Its Idiotope

Deciphering Complex Mechanisms of Resistance and Loss of Potency through Coupled Molecular Dynamics and Machine Learning

Structural and Thermodynamic Basis of Amprenavir/Darunavir and Atazanavir Resistance in HIV-1 Protease with Mutations at Residue 50

Deciphering Antifungal Drug Resistance in Pneumocystis jirovecii DHFR with Molecular Dynamics and Machine Learning

Target-Specific Prediction of Ligand Affinity with Structure-Based Interaction Fingerprints

T cell epitope engineering: an avian H7N9 influenza vaccine strategy for pandemic preparedness and response

Viral proteases: Structure, mechanism and inhibition

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