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Single molecule studies characterize the kinetic mechanism of tetrameric p53 binding to different native response elements

PloS one, 2023-08, Vol.18 (8), p.e0286193-e0286193

2023

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XPB, a subunit of TFIIH, is a target of the natural product triptolide

Nature chemical biology, 2011-03, Vol.7 (3), p.182

2011

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Non-coding-RNA regulators of RNA polymerase II transcription

Nature reviews. Molecular cell biology, 2006-08, Vol.7 (8), p.612-616

2006

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B2 RNA and Alu RNA Repress Transcription by Disrupting Contacts between RNA Polymerase II and Promoter DNA within Assembled Complexes

Proceedings of the National Academy of Sciences - PNAS, 2009-04, Vol.106 (14), p.5569-5574

2009

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Interactions of HMGB Proteins with the Genome and the Impact on Disease

Biomolecules (Basel, Switzerland), 2021-10, Vol.11 (10), p.1451

2021

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Finding the start site: redefining the human initiator element

Genes & development, 2017-01, Vol.31 (1), p.1-2

2017

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Mechanisms and Functions of the RNA Polymerase II General Transcription Machinery during the Transcription Cycle

Biomolecules (Basel, Switzerland), 2024-02, Vol.14 (2), p.176

2024

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The HMGB1 C-Terminal Tail Regulates DNA Bending

Journal of molecular biology, 2016-10, Vol.428 (20), p.4060-4072

2016

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Short‐term exposure to ethanol induces transcriptional changes in nontumorigenic breast cells

FEBS open bio, 2023-10, Vol.13 (10), p.1941-1952

2023

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ERK1/2 activation is a therapeutic target in age-related macular degeneration

Proceedings of the National Academy of Sciences - PNAS, 2012-08, Vol.109 (34), p.13781-13786

2012

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B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

Nature structural & molecular biology, 2004-09, Vol.11 (9), p.822-829

2004

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Using electrophoretic mobility shift assays to measure equilibrium dissociation constants: GAL4‐p53 binding DNA as a model system

Biochemistry and molecular biology education, 2012-11, Vol.40 (6), p.383-387

2012

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Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription

RNA (Cambridge), 2007-04, Vol.13 (4), p.583-596

2007

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The Herpes Simplex Virus 1 Protein ICP4 Acts as both an Activator and a Repressor of Host Genome Transcription during Infection

Molecular and cellular biology, 2021-10, Vol.41 (10), p.e0017121-e0017121

2021

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Evaluating the Relationship between FRET Changes and Distance Changes Using DNA Length and Restriction Enzyme Specificity

Journal of chemical education, 2016-02, Vol.93 (2), p.383-386

2016

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Non-coding RNAs: key regulators of mammalian transcription

Trends in biochemical sciences (Amsterdam. Regular ed.), 2012-04, Vol.37 (4), p.144-151

2012

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Selection and characterization of a DNA aptamer that can discriminate between cJun/cJun and cJun/cFos

PloS one, 2014-06, Vol.9 (6), p.e101015-e101015

2014

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Noncoding RNAs: Regulators of the Mammalian Transcription Machinery

Journal of molecular biology, 2016-06, Vol.428 (12), p.2652-2659

2016

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Heat Shock Causes a Reversible Increase in RNA Polymerase II Occupancy Downstream of mRNA Genes, Consistent with a Global Loss in Transcriptional Termination

Molecular and cellular biology, 2018-09, Vol.38 (18)

2018

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Single molecule studies reveal that p53 tetramers dynamically bind response elements containing one or two half sites

Scientific reports, 2020-09, Vol.10 (1), p.16176-16176, Article 16176

2020

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TFIIF Facilitates Dissociation of RNA Polymerase II from Noncoding RNAs That Lack a Repression Domain

Molecular and Cellular Biology, 2010-01, Vol.30 (1), p.91-97

2010

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The regulation of mammalian mRNA transcription by lncRNAs: recent discoveries and current concepts

Epigenomics, 2013-02, Vol.5 (1), p.95-102

2013

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Release of Human TFIIB from Actively Transcribing Complexes Is Triggered upon Synthesis of 7- and 9-nt RNAs

Journal of molecular biology, 2020-06, Vol.432 (14), p.4049-4060

2020

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Monitoring transcriptional activity by RNA polymerase II in vitro using single molecule co-localization

Methods (San Diego, Calif.), 2019-04, Vol.159-160, p.45-50

2019

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Mechanical memory stored through epigenetic remodeling reduces cell therapeutic potential

Biophysical journal, 2023-04, Vol.122 (8), p.1428-1444

2023

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Single molecule studies characterize the kinetic mechanism of tetrameric p53 binding to different native response elements

XPB, a subunit of TFIIH, is a target of the natural product triptolide

Non-coding-RNA regulators of RNA polymerase II transcription

B2 RNA and Alu RNA Repress Transcription by Disrupting Contacts between RNA Polymerase II and Promoter DNA within Assembled Complexes

Interactions of HMGB Proteins with the Genome and the Impact on Disease

Finding the start site: redefining the human initiator element

Mechanisms and Functions of the RNA Polymerase II General Transcription Machinery during the Transcription Cycle

The HMGB1 C-Terminal Tail Regulates DNA Bending

Short‐term exposure to ethanol induces transcriptional changes in nontumorigenic breast cells

ERK1/2 activation is a therapeutic target in age-related macular degeneration

B2 RNA binds directly to RNA polymerase II to repress transcript synthesis

Using electrophoretic mobility shift assays to measure equilibrium dissociation constants: GAL4‐p53 binding DNA as a model system

Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription

The Herpes Simplex Virus 1 Protein ICP4 Acts as both an Activator and a Repressor of Host Genome Transcription during Infection

Evaluating the Relationship between FRET Changes and Distance Changes Using DNA Length and Restriction Enzyme Specificity

Non-coding RNAs: key regulators of mammalian transcription

Selection and characterization of a DNA aptamer that can discriminate between cJun/cJun and cJun/cFos

Noncoding RNAs: Regulators of the Mammalian Transcription Machinery

Heat Shock Causes a Reversible Increase in RNA Polymerase II Occupancy Downstream of mRNA Genes, Consistent with a Global Loss in Transcriptional Termination

Single molecule studies reveal that p53 tetramers dynamically bind response elements containing one or two half sites

TFIIF Facilitates Dissociation of RNA Polymerase II from Noncoding RNAs That Lack a Repression Domain

The regulation of mammalian mRNA transcription by lncRNAs: recent discoveries and current concepts

Release of Human TFIIB from Actively Transcribing Complexes Is Triggered upon Synthesis of 7- and 9-nt RNAs

Monitoring transcriptional activity by RNA polymerase II in vitro using single molecule co-localization

Mechanical memory stored through epigenetic remodeling reduces cell therapeutic potential

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