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O32: Ensemble prediction of the impact of missense variants substantially decreases VUS rate in genetic testing

Genetics in Medicine Open, 2024, Vol.2, p.101022, Article 101022

2024

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RelEx—Relation extraction using dependency parse trees

Bioinformatics, 2007-02, Vol.23 (3), p.365-371

2007

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Wisdom of crowds for robust gene network inference

Nature methods, 2012-07, Vol.9 (8), p.796-804

2012

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Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression

Nature biotechnology, 2015-01, Vol.33 (1), p.51-57

2015

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Detection of network motifs using three-way ANOVA

PloS one, 2018-08, Vol.13 (8), p.e0201382-e0201382

2018

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Inferring gene regulatory networks by ANOVA

Bioinformatics (Oxford, England), 2012-05, Vol.28 (10), p.1376-1382

2012

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From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems

Bioinformatics, 2011-07, Vol.27 (13), p.i366-i373

2011

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69. Efficient clinical review of complex NGS tumor copy number profiles using ACMG/CGC guidelines and an interactive web app

Cancer genetics, 2023-11, Vol.278-279, p.22

2023

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Addressing false discoveries in network inference

Bioinformatics, 2015-09, Vol.31 (17), p.2836-2843

2015

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A Turing test for artificial expression data

Bioinformatics, 2013-10, Vol.29 (20), p.2603-2609

2013

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Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach

Scientific reports, 2019-01, Vol.9 (1), p.690-690, Article 690

2019

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Rigorous assessment of gene set enrichment tests

Bioinformatics (Oxford, England), 2012-06, Vol.28 (11), p.1480-1486

2012

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The ALS Stratification Prize-Using the Power of Big Data and Crowdsourcing for Catalyzing Breakthroughs in Amyotrophic Lateral Sclerosis (ALS) (P5.102)

Neurology, 2016-04, Vol.86 (16_supplement)

2016

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MIRTFnet: analysis of miRNA regulated transcription factors

PloS one, 2011-08, Vol.6 (8), p.e22519-e22519

2011

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VONC: A solution for the clinical assessment of somatic genomic alterations

Journal of clinical oncology, 2019-05, Vol.37 (15_suppl), p.e13155-e13155

2019

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Being PRO-ACTive: What can a Clinical Trial Database Reveal About ALS?

Neurotherapeutics, 2015-04, Vol.12 (2), p.417-423

2015

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Petri Nets with Fuzzy Logic (PNFL): reverse engineering and parametrization

PloS one, 2010-09, Vol.5 (9), p.e12807-3314

2010

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Refining ensembles of predicted gene regulatory networks based on characteristic interaction sets

PloS one, 2014-02, Vol.9 (2), p.e84596-e84596

2014

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KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis

Bioinformatics (Oxford, England), 2017-05, Vol.33 (10), p.1565-1567

2017

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A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae

Nucleic acids research, 2013-10, Vol.41 (18), p.8452-8463

2013

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Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats

Systematic and applied microbiology, 2014-06, Vol.37 (4), p.287-295

2014

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Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources

Systematic and applied microbiology, 2014-06, Vol.37 (4), p.277-286

2014

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Microarray analyses of transdifferentiated mesenchymal stem cells

Journal of cellular biochemistry, 2008-02, Vol.103 (2), p.413-433

2008

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Reliable gene signatures for microarray classification: assessment of stability and performance

Bioinformatics, 2006-10, Vol.22 (19), p.2356-2363

2006

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Experiment specific expression patterns

Journal of computational biology, 2011-11, Vol.18 (11), p.1423-1435

2011

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O32: Ensemble prediction of the impact of missense variants substantially decreases VUS rate in genetic testing

RelEx—Relation extraction using dependency parse trees

Wisdom of crowds for robust gene network inference

Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression

Detection of network motifs using three-way ANOVA

Inferring gene regulatory networks by ANOVA

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems

69. Efficient clinical review of complex NGS tumor copy number profiles using ACMG/CGC guidelines and an interactive web app

Addressing false discoveries in network inference

A Turing test for artificial expression data

Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach

Rigorous assessment of gene set enrichment tests

The ALS Stratification Prize-Using the Power of Big Data and Crowdsourcing for Catalyzing Breakthroughs in Amyotrophic Lateral Sclerosis (ALS) (P5.102)

MIRTFnet: analysis of miRNA regulated transcription factors

VONC: A solution for the clinical assessment of somatic genomic alterations

Being PRO-ACTive: What can a Clinical Trial Database Reveal About ALS?

Petri Nets with Fuzzy Logic (PNFL): reverse engineering and parametrization

Refining ensembles of predicted gene regulatory networks based on characteristic interaction sets

KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis

A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part II. Mimicking environmental conditions during cultivation in retentostats

Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources

Microarray analyses of transdifferentiated mesenchymal stem cells

Reliable gene signatures for microarray classification: assessment of stability and performance

Experiment specific expression patterns

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