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Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

Applied and Environmental Microbiology, 2009-11, Vol.75 (22), p.7115-7124

2009

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Pyrosequencing reveals the influence of organic and conventional farming systems on bacterial communities

PloS one, 2012-12, Vol.7 (12), p.e51897-e51897

2012

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Characterization of the gut-associated microbiome in inflammatory pouch complications following ileal pouch-anal anastomosis

PloS one, 2013-09, Vol.8 (9), p.e66934-e66934

2013

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Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease

Inflammatory bowel diseases, 2007-06, Vol.13 (6), p.675-683

2007

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Antimicrobial resistance of Enterococcus species from meat and fermented meat products isolated by a PCR-based rapid screening method

International journal of food microbiology, 2013-05, Vol.163 (2-3), p.89-95

2013

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Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar

Inflammatory bowel diseases, 2016-01, Vol.22 (1), p.1-12

2016

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The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis

Frontiers in microbiology, 2016-03, Vol.7, p.426-426

2016

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Complete Genome Sequence of Adherent Invasive Escherichia coli UM146 Isolated from Ileal Crohn's Disease Biopsy Tissue

Journal of Bacteriology, 2011-01, Vol.193 (2), p.583-583

2011

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Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics

FEMS microbiology reviews, 2003-12, Vol.27 (5), p.663-693

2003

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Surface Expression of Toll-Like Receptor 9 Is Upregulated on Intestinal Epithelial Cells in Response to Pathogenic Bacterial DNA

Infection and Immunity, 2007-05, Vol.75 (5), p.2572-2579

2007

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Effect of Environmental Factors and Influence of Rumen and Hindgut Biogeography on Bacterial Communities in Steers

Applied and Environmental Microbiology, 2011-01, Vol.77 (1), p.258-268

2011

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Assessing the Inactivation of Mycobacterium avium subsp. paratuberculosis during Composting of Livestock Carcasses

Applied and Environmental Microbiology, 2013-05, Vol.79 (10), p.3215-3224

2013

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High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease

Gut, 2007-05, Vol.56 (5), p.669-675

2007

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Bacterial communities of an agricultural soil amended with solid pig and dairy manures, and urea fertilizer

Applied soil ecology : a section of Agriculture, ecosystems & environment, 2016-07, Vol.103, p.61-71

2016

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Potential To Reduce Escherichia coli Shedding in Cattle Feces by Using Sainfoin (Onobrychis viciifolia) Forage, Tested In Vitro and In Vivo

Applied and Environmental Microbiology, 2009-02, Vol.75 (4), p.1074-1079

2009

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Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn’s Disease

Inflammatory bowel diseases, 2019-10, Vol.25 (11), p.1796-1804

2019

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Characterization of Escherichia coli isolated from gut biopsies of newly diagnosed patients with inflammatory bowel disease

Inflammatory bowel diseases, 2011-07, Vol.17 (7), p.1451-1463

2011

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Phylogenetic analysis of inflammatory bowel disease associated Escherichia coli and the fimH virulence determinant

Inflammatory bowel diseases, 2009-11, Vol.15 (11), p.1737-1745

2009

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Isolation and characterization of proteolytic ruminal bacteria from sheep and goats fed the tannin-containing shrub legume Calliandra calothyrsus

Applied and Environmental Microbiology, 1999-07, Vol.65 (7), p.3075-3083

1999

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Microbiome profiling of drinking water in relation to incidence of inflammatory bowel disease

Canadian journal of microbiology, 2016-09, Vol.62 (9), p.781

2016

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Pathophysiology and pathogenesis of immune-mediated inflammatory diseases: commonalities and differences

Journal of rheumatology. Supplement, 2010-05, Vol.85, p.11

2010

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16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep

Microbiology (Society for General Microbiology), 1999-07, Vol.145 ( Pt 7), p.1797

1999

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Nonstarch Polysaccharide Hydrolysis Products of Soybean and Canola Meal Protect against Enterotoxigenic Escherichia coli in Piglets

The Journal of nutrition, 2008-03, Vol.138 (3), p.502-508

2008

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Tu1905 Interaction of IBD-Associated Genetic Polymorphisms and the Microbiome of the Pelvic Pouch

Gastroenterology (New York, N.Y. 1943), 2012-05, Vol.142 (5), p.S-874-S-875

2012

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Evaluation of the Pouch Microbiome Using RT-PCR Identifies Specific Microbial Elements Associated With Outcome

Gastroenterology (New York, N.Y. 1943), 2011, Vol.140 (5), p.S-330-S-331

2011

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Rumen Microbiome Composition Determined Using Two Nutritional Models of Subacute Ruminal Acidosis

Pyrosequencing reveals the influence of organic and conventional farming systems on bacterial communities

Characterization of the gut-associated microbiome in inflammatory pouch complications following ileal pouch-anal anastomosis

Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease

Antimicrobial resistance of Enterococcus species from meat and fermented meat products isolated by a PCR-based rapid screening method

Genome-based Definition of an Inflammatory Bowel Disease-associated Adherent-Invasive Escherichia coli Pathovar

The Features of Fecal and Ileal Mucosa-Associated Microbiota in Dairy Calves during Early Infection with Mycobacterium avium Subspecies paratuberculosis

Complete Genome Sequence of Adherent Invasive Escherichia coli UM146 Isolated from Ileal Crohn's Disease Biopsy Tissue

Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics

Surface Expression of Toll-Like Receptor 9 Is Upregulated on Intestinal Epithelial Cells in Response to Pathogenic Bacterial DNA

Effect of Environmental Factors and Influence of Rumen and Hindgut Biogeography on Bacterial Communities in Steers

Assessing the Inactivation of Mycobacterium avium subsp. paratuberculosis during Composting of Livestock Carcasses

High prevalence of Escherichia coli belonging to the B2+D phylogenetic group in inflammatory bowel disease

Bacterial communities of an agricultural soil amended with solid pig and dairy manures, and urea fertilizer

Potential To Reduce Escherichia coli Shedding in Cattle Feces by Using Sainfoin (Onobrychis viciifolia) Forage, Tested In Vitro and In Vivo

Analysis of Genetic Association of Intestinal Permeability in Healthy First-degree Relatives of Patients with Crohn’s Disease

Characterization of Escherichia coli isolated from gut biopsies of newly diagnosed patients with inflammatory bowel disease

Phylogenetic analysis of inflammatory bowel disease associated Escherichia coli and the fimH virulence determinant

Isolation and characterization of proteolytic ruminal bacteria from sheep and goats fed the tannin-containing shrub legume Calliandra calothyrsus

Microbiome profiling of drinking water in relation to incidence of inflammatory bowel disease

Pathophysiology and pathogenesis of immune-mediated inflammatory diseases: commonalities and differences

16S rDNA sequencing of Ruminococcus albus and Ruminococcus flavefaciens: design of a signature probe and its application in adult sheep

Nonstarch Polysaccharide Hydrolysis Products of Soybean and Canola Meal Protect against Enterotoxigenic Escherichia coli in Piglets

Tu1905 Interaction of IBD-Associated Genetic Polymorphisms and the Microbiome of the Pelvic Pouch

Evaluation of the Pouch Microbiome Using RT-PCR Identifies Specific Microbial Elements Associated With Outcome

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