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Inferring chromatin accessibility during murine hematopoiesis through phylogenetic analysis

BMC research notes, 2023-09, Vol.16 (1), p.1-222, Article 222

Koyanagi, Kanako O

2023

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Inferring changes in histone modification during cell differentiation by ancestral state estimation based on phylogenetic trees of cell types: Human hematopoiesis as a model case

Gene, 2019-01, Vol.721, p.100021-100021, Article 100021

Koyanagi, Kanako O.

2019

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Genome-wide association mapping focusing on a rice population derived from rice breeding programs in a region

Breeding Science, 2015, Vol.65(5), pp.403-410

2015

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Biosynthetic Short Neuropeptides: A Rational Theory Based on Experimental Results for the Missing Pain‐Relief Opioid Endomorphin Precursor Gene

Chembiochem : a European journal of chemical biology, 2019-08, Vol.20 (16), p.2054-2058

2019

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Translation of continuous artificial selection on phenotype into genotype during rice breeding programs

Breeding Science, 2021, Vol.71(2), pp.125-133

2021

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Phylogenetic analysis of endogenous viral elements in the rice genome reveals local chromosomal evolution in Oryza AA-genome species

Frontiers in plant science, 2023-10, Vol.14, p.1261705-1261705

2023

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Inferring cell differentiation processes based on phylogenetic analysis of genome-wide epigenetic information: hematopoiesis as a model case

Genome biology and evolution, 2015-01, Vol.7 (3), p.699-705

Koyanagi, Kanako O

2015

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Complete Genome Analysis of a Novel Intertypic Recombinant Human Adenovirus Causing Epidemic Keratoconjunctivitis in Japan

Journal of Clinical Microbiology, 2011-02, Vol.49 (2), p.484-490

2011

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Intertypic modular exchanges of genomic segments by homologous recombination at universally conserved segments in human adenovirus species D

Gene, 2014-08, Vol.547 (1), p.10-17

2014

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Highly Diversified Molecular Evolution of Downstream Transcription Start Sites in Rice and Arabidopsis

Plant physiology (Bethesda), 2009-03, Vol.149 (3), p.1316-1324

2009

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Recombination analysis of intermediate human adenovirus type 53 in Japan by complete genome sequence

Journal of general virology, 2011-06, Vol.92 (Pt 6), p.1251-1259

2011

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Adenovirus-Associated Uveitis with Necrotizing Retinitis

Ophthalmology (Rochester, Minn.), 2023-04, Vol.130 (4), p.443-445

2023

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Identification of contamination in the American type culture collection stock of human adenovirus type 8 by whole-genome sequencing

Journal of virology, 2013-01, Vol.87 (2), p.1285-1286

2013

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Interregional Coevolution Analysis Revealing Functional and Structural Interrelatedness between Different Genomic Regions in Human Mastadenovirus D

Journal of virology, 2015-06, Vol.89 (12), p.6209-6217

2015

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Evolutionary force of AT‐rich repeats to trap genomic and episomal DNAs into the rice genome: lessons from endogenous pararetrovirus

The Plant journal : for cell and molecular biology, 2012-12, Vol.72 (5), p.817-828

2012

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Rice genomes recorded ancient pararetrovirus activities: Virus genealogy and multiple origins of endogenization during rice speciation

Virology (New York, N.Y.), 2014-12, Vol.471, p.141-152

2014

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In silico and in vivo identification of the intermediate filament vimentin that is downregulated downstream of Brachyury during Xenopus embryogenesis

Gene, 2012-01, Vol.491 (2), p.232-236

2012

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Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii

Biology direct, 2016-08, Vol.11 (1), p.35-35, Article 35

2016

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Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB)

Gene, 2005-12, Vol.364, p.99-107

2005

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A web tool for comparative genomics: G-compass

Gene, 2005-12, Vol.364, p.45-52

2005

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Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes

Gene, 2007-03, Vol.389 (2), p.196-203

2007

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Highly Diversified Molecular Evolution of Downstream Transcription Start Sites in Rice and Arabidopsis1[W][OA]

Plant physiology (Bethesda), 2009-03, Vol.149 (3), p.1316-1324

2009

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Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system

Gene, 2005-07, Vol.353 (2), p.169-176

2005

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Inferring chromatin accessibility during murine hematopoiesis through phylogenetic analysis

Inferring changes in histone modification during cell differentiation by ancestral state estimation based on phylogenetic trees of cell types: Human hematopoiesis as a model case

Genome-wide association mapping focusing on a rice population derived from rice breeding programs in a region

Biosynthetic Short Neuropeptides: A Rational Theory Based on Experimental Results for the Missing Pain‐Relief Opioid Endomorphin Precursor Gene

Translation of continuous artificial selection on phenotype into genotype during rice breeding programs

Phylogenetic analysis of endogenous viral elements in the rice genome reveals local chromosomal evolution in Oryza AA-genome species

Inferring cell differentiation processes based on phylogenetic analysis of genome-wide epigenetic information: hematopoiesis as a model case

Complete Genome Analysis of a Novel Intertypic Recombinant Human Adenovirus Causing Epidemic Keratoconjunctivitis in Japan

Intertypic modular exchanges of genomic segments by homologous recombination at universally conserved segments in human adenovirus species D

Highly Diversified Molecular Evolution of Downstream Transcription Start Sites in Rice and Arabidopsis

Recombination analysis of intermediate human adenovirus type 53 in Japan by complete genome sequence

Adenovirus-Associated Uveitis with Necrotizing Retinitis

Identification of contamination in the American type culture collection stock of human adenovirus type 8 by whole-genome sequencing

Interregional Coevolution Analysis Revealing Functional and Structural Interrelatedness between Different Genomic Regions in Human Mastadenovirus D

Evolutionary force of AT‐rich repeats to trap genomic and episomal DNAs into the rice genome: lessons from endogenous pararetrovirus

Rice genomes recorded ancient pararetrovirus activities: Virus genealogy and multiple origins of endogenization during rice speciation

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs

In silico and in vivo identification of the intermediate filament vimentin that is downregulated downstream of Brachyury during Xenopus embryogenesis

Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii

Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB)

A web tool for comparative genomics: G-compass

Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes

Highly Diversified Molecular Evolution of Downstream Transcription Start Sites in Rice and Arabidopsis1[W][OA]

Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

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