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CellMiner: A Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set

Cancer research (Chicago, Ill.), 2012-07, Vol.72 (14), p.3499-3511

2012

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Gene expression correlations in human cancer cell lines define molecular interaction networks for epithelial phenotype

PloS one, 2014-06, Vol.9 (6), p.e99269

2014

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SCLC-CellMiner: A Resource for Small Cell Lung Cancer Cell Line Genomics and Pharmacology Based on Genomic Signatures

Cell reports (Cambridge), 2020-10, Vol.33 (3), p.108296-108296, Article 108296

2020

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Heat shock protein 90α (HSP90α), a substrate and chaperone of DNA-PK necessary for the apoptotic response

Proceedings of the National Academy of Sciences - PNAS, 2012-08, Vol.109 (32), p.12866-12872

2012

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Apoptosis defects and chemotherapy resistance: molecular interaction maps and networks

Oncogene, 2004-04, Vol.23 (16), p.2934-2949

2004

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CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines

iScience, 2018-12, Vol.10, p.247-264

2018

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Ataxia telangiectasia mutated activation by transcription- and topoisomerase I-induced DNA double-strand breaks

EMBO reports, 2009-08, Vol.10 (8), p.887-893

2009

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Death Receptor-Induced Activation of the Chk2- and Histone H2AX-Associated DNA Damage Response Pathways

Molecular and Cellular Biology, 2009-01, Vol.29 (1), p.68-82

2009

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SIRT1/PARP1 crosstalk: connecting DNA damage and metabolism

Genome integrity, 2013-12, Vol.4 (1), p.6-6

2013

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NCI-60 whole exome sequencing and pharmacological CellMiner analyses

PloS one, 2014-07, Vol.9 (7), p.e101670-e101670

2014

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Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response

PLoS computational biology, 2015-05, Vol.11 (5), p.e1004144-e1004144

2015

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Transcription Poisoning by Topoisomerase I Is Controlled by Gene Length, Splice Sites, and miR-142-3p

Cancer research (Chicago, Ill.), 2013-08, Vol.73 (15), p.4830-4839

2013

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A novel norindenoisoquinoline structure reveals a common interfacial inhibitor paradigm for ternary trapping of the topoisomerase I-DNA covalent complex

Molecular cancer therapeutics, 2006-02, Vol.5 (2), p.287-295

2006

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Genome-wide Analysis of Novel Splice Variants Induced by Topoisomerase I Poisoning Shows Preferential Occurrence in Genes Encoding Splicing Factors

Cancer research (Chicago, Ill.), 2010-10, Vol.70 (20), p.8055-8065

2010

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Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples

PloS one, 2012-07, Vol.7 (7), p.e40062-e40062

2012

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Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes

PloS one, 2012-05, Vol.7 (5), p.e35716-e35716

2012

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A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method

BMC bioinformatics, 2011-05, Vol.12 (1), p.167-167, Article 167

2011

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Chk2 Molecular Interaction Map and Rationale for Chk2 Inhibitors

Clinical cancer research, 2006-05, Vol.12 (9), p.2657-2661

2006

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Hereditary ataxia SCAN1 cells are defective for the repair of transcription-dependent topoisomerase I cleavage complexes

DNA repair, 2006-12, Vol.5 (12), p.1489-1494

2006

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An Information-Intensive Approach to the Molecular Pharmacology of Cancer

Science (American Association for the Advancement of Science), 1997-01, Vol.275 (5298), p.343-349

1997

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Functional categories associated with clusters of genes that are co-expressed across the NCI-60 cancer cell lines

PloS one, 2012-01, Vol.7 (1), p.e30317-e30317

2012

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Predicted functions of MdmX in fine-tuning the response of p53 to DNA damage

PLoS computational biology, 2010-02, Vol.6 (2), p.e1000665-e1000665

2010

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PathVisio-Validator: a rule-based validation plugin for graphical pathway notations

Bioinformatics (Oxford, England), 2012-03, Vol.28 (6), p.889-890

2012

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The NCI-60 Methylome and Its Integration into CellMiner

Cancer research (Chicago, Ill.), 2017-02, Vol.77 (3), p.601-612

2017

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Molecular interaction map of the mammalian cell cycle control and DNA repair systems

Molecular biology of the cell, 1999-08, Vol.10 (8), p.2703-2734

1999

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CellMiner: A Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set

Gene expression correlations in human cancer cell lines define molecular interaction networks for epithelial phenotype

SCLC-CellMiner: A Resource for Small Cell Lung Cancer Cell Line Genomics and Pharmacology Based on Genomic Signatures

Heat shock protein 90α (HSP90α), a substrate and chaperone of DNA-PK necessary for the apoptotic response

Apoptosis defects and chemotherapy resistance: molecular interaction maps and networks

CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines

Ataxia telangiectasia mutated activation by transcription- and topoisomerase I-induced DNA double-strand breaks

Death Receptor-Induced Activation of the Chk2- and Histone H2AX-Associated DNA Damage Response Pathways

SIRT1/PARP1 crosstalk: connecting DNA damage and metabolism

NCI-60 whole exome sequencing and pharmacological CellMiner analyses

Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response

Transcription Poisoning by Topoisomerase I Is Controlled by Gene Length, Splice Sites, and miR-142-3p

A novel norindenoisoquinoline structure reveals a common interfacial inhibitor paradigm for ternary trapping of the topoisomerase I-DNA covalent complex

Genome-wide Analysis of Novel Splice Variants Induced by Topoisomerase I Poisoning Shows Preferential Occurrence in Genes Encoding Splicing Factors

Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples

Gene expression profiles of the NCI-60 human tumor cell lines define molecular interaction networks governing cell migration processes

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method

Chk2 Molecular Interaction Map and Rationale for Chk2 Inhibitors

Hereditary ataxia SCAN1 cells are defective for the repair of transcription-dependent topoisomerase I cleavage complexes

An Information-Intensive Approach to the Molecular Pharmacology of Cancer

Functional categories associated with clusters of genes that are co-expressed across the NCI-60 cancer cell lines

Predicted functions of MdmX in fine-tuning the response of p53 to DNA damage

PathVisio-Validator: a rule-based validation plugin for graphical pathway notations

The NCI-60 Methylome and Its Integration into CellMiner

Molecular interaction map of the mammalian cell cycle control and DNA repair systems

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