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Single cell analysis of adult mouse skeletal muscle stem cells in homeostatic and regenerative conditions

Development (Cambridge), 2019-04, Vol.146 (12)

2019

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Epigenetic targeting of bromodomain protein BRD4 counteracts cancer cachexia and prolongs survival

Nature communications, 2017-11, Vol.8 (1), p.1707-16, Article 1707

2017

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Roles of H3K27me2 and H3K27me3 Examined during Fate Specification of Embryonic Stem Cells

Cell reports (Cambridge), 2016-10, Vol.17 (5), p.1369-1382

2016

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A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans

Molecular cell, 2018-07, Vol.71 (1), p.129-141.e8

2018

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A deep learning framework for denoising and ordering scRNA-seq data using adversarial autoencoder with dynamic batching

STAR protocols, 2024-06, Vol.5 (2), p.103067, Article 103067

2024

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A deep learning adversarial autoencoder with dynamic batching displays high performance in denoising and ordering scRNA-seq data

iScience, 2024-03, Vol.27 (3), p.109027-109027, Article 109027

2024

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Phylogenetic Profiles Reveal Evolutionary Relationships within the "Twilight Zone" of Sequence Similarity

Proceedings of the National Academy of Sciences - PNAS, 2008-09, Vol.105 (36), p.13474-13479

2008

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Integrating single-cell transcriptomes, chromatin accessibility, and multiomics analysis of mesoderm-induced embryonic stem cells

STAR protocols, 2023-06, Vol.4 (2), p.102307-102307, Article 102307

2023

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Through the Bloodstream: A Novel Biomarker Search for Early Blood‐Based Alzheimer’s Diagnosis Using an Adversarial Autoencoder

Alzheimer's & dementia, 2023-06, Vol.19 (S2), p.n/a

2023

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Predicting protein folds with fold-specific PSSM libraries

PloS one, 2011-06, Vol.6 (6), p.e20557-e20557

2011

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PHYRN: a robust method for phylogenetic analysis of highly divergent sequences

PloS one, 2012-04, Vol.7 (4), p.e34261-e34261

2012

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Psat1-generated α-ketoglutarate and glutamine promote muscle stem cell activation and regeneration

Genes & development, 2024-02, Vol.38 (3-4), p.151-167

2024

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Polycomb Ezh2 controls the fate of GABAergic neurons in the embryonic cerebellum

Development (Cambridge), 2016-06, Vol.143 (11), p.1971-1980

2016

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Polycomb Ezh1 maintains murine muscle stem cell quiescence through non-canonical regulation of Notch signaling

Developmental cell, 2023-06, Vol.58 (12), p.1052-1070.e10

2023

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Transcriptomics, regulatory syntax, and enhancer identification in mesoderm-induced ESCs at single-cell resolution

Cell reports (Cambridge), 2022-08, Vol.40 (7), p.111219-111219, Article 111219

2022

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The Elongation Factor Spt6 Maintains ESC Pluripotency by Controlling Super-Enhancers and Counteracting Polycomb Proteins

Molecular cell, 2017-10, Vol.68 (2), p.398-413.e6

2017

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Correction: Single cell analysis of adult mouse skeletal muscle stem cells in homeostatic and regenerative conditions (doi: 10.1242/dev.174177)

Development (Cambridge), 2019-06, Vol.146 (13)

2019

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The development of a proteomic analyzing pipeline to identify proteins with multiple RRMs and predict their domain boundaries

2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), 2011, p.374-381

2011

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Phylogenetic profiles reveal structural/functional determinants of TRPC3 signal-sensing antennae

Communicative & integrative biology, 2009, Vol.2 (2), p.133-137

2009

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Predicting the severity of motor neuron disease progression using electronic health record data with a cloud computing Big Data approach

2014 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014, p.1-6

2014

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Roles of H3K27me2 and H3K27me3 Examined during Fate Specification of Embryonic Stem Cells

Cell reports (Cambridge), 2017-01, Vol.18 (1), p.297-297

2017

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SMISB: A system for Managing Minimum Information from omics' studies in systems biology

2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2012, p.164-168

2012

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Predicting protein-protein interactions using full Bayesian network

2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012, p.544-550

2012

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The classification of a protein from its primary sequence using functional and structural-specific PSSMs in quantitative measurement

2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop, 2009, p.345-345

2009

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Phylogenetic Profiles Reveal Structural and Functional Determinants of Lipid-binding

Journal of proteomics & bioinformatics, 2009-03, Vol.2 (3), p.139-149

2009

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Single cell analysis of adult mouse skeletal muscle stem cells in homeostatic and regenerative conditions

Epigenetic targeting of bromodomain protein BRD4 counteracts cancer cachexia and prolongs survival

Roles of H3K27me2 and H3K27me3 Examined during Fate Specification of Embryonic Stem Cells

A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans

A deep learning framework for denoising and ordering scRNA-seq data using adversarial autoencoder with dynamic batching

A deep learning adversarial autoencoder with dynamic batching displays high performance in denoising and ordering scRNA-seq data

Phylogenetic Profiles Reveal Evolutionary Relationships within the "Twilight Zone" of Sequence Similarity

Integrating single-cell transcriptomes, chromatin accessibility, and multiomics analysis of mesoderm-induced embryonic stem cells

Through the Bloodstream: A Novel Biomarker Search for Early Blood‐Based Alzheimer’s Diagnosis Using an Adversarial Autoencoder

Predicting protein folds with fold-specific PSSM libraries

PHYRN: a robust method for phylogenetic analysis of highly divergent sequences

Psat1-generated α-ketoglutarate and glutamine promote muscle stem cell activation and regeneration

Polycomb Ezh2 controls the fate of GABAergic neurons in the embryonic cerebellum

Polycomb Ezh1 maintains murine muscle stem cell quiescence through non-canonical regulation of Notch signaling

Transcriptomics, regulatory syntax, and enhancer identification in mesoderm-induced ESCs at single-cell resolution

The Elongation Factor Spt6 Maintains ESC Pluripotency by Controlling Super-Enhancers and Counteracting Polycomb Proteins

Correction: Single cell analysis of adult mouse skeletal muscle stem cells in homeostatic and regenerative conditions (doi: 10.1242/dev.174177)

The development of a proteomic analyzing pipeline to identify proteins with multiple RRMs and predict their domain boundaries

Phylogenetic profiles reveal structural/functional determinants of TRPC3 signal-sensing antennae

Predicting the severity of motor neuron disease progression using electronic health record data with a cloud computing Big Data approach

Roles of H3K27me2 and H3K27me3 Examined during Fate Specification of Embryonic Stem Cells

SMISB: A system for Managing Minimum Information from omics' studies in systems biology

Predicting protein-protein interactions using full Bayesian network

The classification of a protein from its primary sequence using functional and structural-specific PSSMs in quantitative measurement

Phylogenetic Profiles Reveal Structural and Functional Determinants of Lipid-binding

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