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Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities

mSystems, 2019-05, Vol.4 (3)

Kleiner, Manuel

2019

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Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes

PLoS pathogens, 2021-02, Vol.17 (2), p.e1009245-e1009245

2021

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Assessing species biomass contributions in microbial communities via metaproteomics

Nature communications, 2017-11, Vol.8 (1), p.1558-14, Article 1558

2017

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Dietary protein and the intestinal microbiota: An understudied relationship

iScience, 2022-11, Vol.25 (11), p.105313-105313, Article 105313

2022

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Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses

Annual review of microbiology, 2021-10, Vol.75 (1), p.695-718

2021

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A shared core microbiome in soda lakes separated by large distances

Nature communications, 2019-09, Vol.10 (1), p.4230-10, Article 4230

2019

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Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes

Microbiology spectrum, 2021-12, Vol.9 (3), p.e0187721-e0187721

2021

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Considerations for constructing a protein sequence database for metaproteomics

Computational and structural biotechnology journal, 2022-01, Vol.20, p.937-952

2022

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Environmental Viscosity Modulates Interbacterial Killing during Habitat Transition

mBio, 2020-02, Vol.11 (1)

2020

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Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis

The ISME Journal, 2017-02, Vol.11 (2), p.463-477

2017

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Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella

PLoS pathogens, 2024-06, Vol.20 (6), p.e1012301

2024

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More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics

Frontiers in microbiology, 2019-02, Vol.10, p.238-238

2019

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Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes

Molecular plant-microbe interactions, 2022-11, Vol.35 (11), p.977-988

2022

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Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp

Frontiers in microbiology, 2017-08, Vol.8, p.1461-1461

2017

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Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities

Frontiers in plant science, 2022-06, Vol.13, p.910377-910377

2022

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Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (19), p.7148-7149

2012

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Genetic Evidence for Two Carbon Fixation Pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in Symbiotic and Free-Living Bacteria

mSphere, 2019-01, Vol.4 (1)

2019

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Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses

Microbiology spectrum, 2021-10, Vol.9 (2), p.e0142921-e0142921

2021

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Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria

Frontiers in microbiology, 2018-05, Vol.9, p.938-938

2018

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Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities

Microbiome, 2020-11, Vol.8 (1), p.158-158, Article 158

2020

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Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation

mBio, 2019-06, Vol.10 (3)

2019

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Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium

Microbiome, 2022-10, Vol.10 (1), p.178-18, Article 178

2022

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Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization

Microbiology spectrum, 2024-01, Vol.12 (1), p.e0240123-e0240123

2024

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Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation

Nature microbiology, 2016-10, Vol.2 (1), p.16195, Article 16195

2016

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Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes

Microbiome, 2023-02, Vol.11 (1), p.24-23, Article 24

2023

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Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities

Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes

Assessing species biomass contributions in microbial communities via metaproteomics

Dietary protein and the intestinal microbiota: An understudied relationship

Life in the Dark: Phylogenetic and Physiological Diversity of Chemosynthetic Symbioses

A shared core microbiome in soda lakes separated by large distances

Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes

Considerations for constructing a protein sequence database for metaproteomics

Environmental Viscosity Modulates Interbacterial Killing during Habitat Transition

Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis

Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella

More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics

Evaluation of Protein Extraction Methods for Metaproteomic Analyses of Root-Associated Microbes

Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp

Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities

Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

Genetic Evidence for Two Carbon Fixation Pathways (the Calvin-Benson-Bassham Cycle and the Reverse Tricarboxylic Acid Cycle) in Symbiotic and Free-Living Bacteria

Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses

Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria

Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities

Sulfur-Oxidizing Symbionts without Canonical Genes for Autotrophic CO2 Fixation

Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium

Evaluation of ready-to-use freezer stocks of a synthetic microbial community for maize root colonization

Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation

Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes

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