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Propagating annotations of molecular networks using in silico fragmentation

PLoS computational biology, 2018-04, Vol.14 (4), p.e1006089-e1006089

2018

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Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

BMC genomics, 2019-01, Vol.20 (1), p.23-23, Article 23

2019

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Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics

PloS one, 2010-06, Vol.5 (6), p.e11257-e11257

2010

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Pseudonocardia Symbionts of Fungus-Growing Ants and the Evolution of Defensive Secondary Metabolism

Frontiers in microbiology, 2020-12, Vol.11, p.621041-621041

2020

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Macrotermycins A–D, Glycosylated Macrolactams from a Termite-Associated Amycolatopsis sp. M39

Organic letters, 2017-03, Vol.19 (5), p.1000-1003

2017

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Microbial Strain Prioritization Using Metabolomics Tools for the Discovery of Natural Products

Analytical chemistry (Washington), 2012-05, Vol.84 (10), p.4277-4283

2012

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Broadening Participation in Scientific Conferences during the Era of Social Distancing

Trends in microbiology (Regular ed.), 2020-12, Vol.28 (12), p.949-952

2020

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Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes

mSystems, 2016-03, Vol.1 (2), p.e00028-16

2016

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Resistance waxes for mutualists protected by wasp secretions

Proceedings of the National Academy of Sciences - PNAS, 2023-09, Vol.120 (36), p.e2311815120-e2311815120

Klassen, Jonathan L

2023

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Can They Make It on Their Own? Hosts, Microbes, and the Holobiont Niche

Frontiers in microbiology, 2016-10, Vol.7, p.1647-1647

2016

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Efomycins K and L From a Termite-Associated Streptomyces sp. M56 and Their Putative Biosynthetic Origin

Frontiers in microbiology, 2019-08, Vol.10, p.1739-1739

2019

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Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation

BMC genomics, 2012-01, Vol.13 (1), p.14-14

2012

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Trachymyrmex septentrionalis Ant Microbiome Assembly Is Unique to Individual Colonies and Castes

mSphere, 2022-08, Vol.7 (4), p.e0098921-e0098921

2022

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Microtermolides A and B from Termite-Associated Streptomyces sp. and Structural Revision of Vinylamycin

Organic letters, 2012-06, Vol.14 (11), p.2822-2825

2012

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Cycloheximide-Producing Streptomyces Associated With Xyleborinus saxesenii and Xyleborus affinis Fungus-Farming Ambrosia Beetles

Frontiers in microbiology, 2020-09, Vol.11, p.562140-562140

2020

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Evaluation of DESS as a storage medium for microbial community analysis

PeerJ (San Francisco, CA), 2019-02, Vol.7, p.e6414-e6414, Article e6414

2019

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ORFcor: identifying and accommodating ORF prediction inconsistencies for phylogenetic analysis

PloS one, 2013-03, Vol.8 (3), p.e58387-e58387

2013

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Pathway Evolution by Horizontal Transfer and Positive Selection Is Accommodated by Relaxed Negative Selection upon Upstream Pathway Genes in Purple Bacterial Carotenoid Biosynthesis

Journal of Bacteriology, 2009-12, Vol.191 (24), p.7500-7508

KLASSEN, Jonathan L

2009

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Differences in Carotenoid Composition among Hymenobacter and Related Strains Support a Tree-Like Model of Carotenoid Evolution

Applied and Environmental Microbiology, 2008-04, Vol.74 (7), p.2016-2022

2008

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Deciphering the Microbiome: Integrating Theory, New Technologies, and Inclusive Science

mSystems, 2022-10, Vol.7 (5), p.e0058322-e0058322

2022

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Microbiota Perturbation or Elimination Can Inhibit Normal Development and Elicit a Starvation-Like Response in an Omnivorous Model Invertebrate

mSystems, 2021-08, Vol.6 (4), p.e0080221-e0080221

2021

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Ecology helps bound causal explanations in microbiology

Biology & philosophy, 2020-02, Vol.35 (1), Article 3

Klassen, Jonathan L.

2020

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Evolution of Interbacterial Antagonism in Bee Gut Microbiota Reflects Host and Symbiont Diversification

mSystems, 2021-05, Vol.6 (3)

2021

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It's the Economy, Stupid: Applying (Micro)economic Principles to Microbiome Science

mSystems, 2022-02, Vol.7 (1), p.e0103321-e0103321

2022

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Genomes of Gut Bacteria from Nasonia Wasps Shed Light on Phylosymbiosis and Microbe-Assisted Hybrid Breakdown

mSystems, 2021-04, Vol.6 (2)

2021

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Propagating annotations of molecular networks using in silico fragmentation

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics

Pseudonocardia Symbionts of Fungus-Growing Ants and the Evolution of Defensive Secondary Metabolism

Macrotermycins A–D, Glycosylated Macrolactams from a Termite-Associated Amycolatopsis sp. M39

Microbial Strain Prioritization Using Metabolomics Tools for the Discovery of Natural Products

Broadening Participation in Scientific Conferences during the Era of Social Distancing

Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes

Resistance waxes for mutualists protected by wasp secretions

Can They Make It on Their Own? Hosts, Microbes, and the Holobiont Niche

Efomycins K and L From a Termite-Associated Streptomyces sp. M56 and Their Putative Biosynthetic Origin

Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation

Trachymyrmex septentrionalis Ant Microbiome Assembly Is Unique to Individual Colonies and Castes

Microtermolides A and B from Termite-Associated Streptomyces sp. and Structural Revision of Vinylamycin

Cycloheximide-Producing Streptomyces Associated With Xyleborinus saxesenii and Xyleborus affinis Fungus-Farming Ambrosia Beetles

Evaluation of DESS as a storage medium for microbial community analysis

ORFcor: identifying and accommodating ORF prediction inconsistencies for phylogenetic analysis

Pathway Evolution by Horizontal Transfer and Positive Selection Is Accommodated by Relaxed Negative Selection upon Upstream Pathway Genes in Purple Bacterial Carotenoid Biosynthesis

Differences in Carotenoid Composition among Hymenobacter and Related Strains Support a Tree-Like Model of Carotenoid Evolution

Deciphering the Microbiome: Integrating Theory, New Technologies, and Inclusive Science

Microbiota Perturbation or Elimination Can Inhibit Normal Development and Elicit a Starvation-Like Response in an Omnivorous Model Invertebrate

Ecology helps bound causal explanations in microbiology

Evolution of Interbacterial Antagonism in Bee Gut Microbiota Reflects Host and Symbiont Diversification

It's the Economy, Stupid: Applying (Micro)economic Principles to Microbiome Science

Genomes of Gut Bacteria from Nasonia Wasps Shed Light on Phylosymbiosis and Microbe-Assisted Hybrid Breakdown

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