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Stochastic Variational Inference for Bayesian Phylogenetics: A Case of CAT Model

Molecular biology and evolution, 2019-04, Vol.36 (4), p.825-833

2019

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Rates of Molecular Evolution Suggest Natural History of Life History Traits and a Post-K-Pg Nocturnal Bottleneck of Placentals

Current biology, 2017-10, Vol.27 (19), p.3025-3033.e5

2017

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An R script for unbiased estimation of stocking effectiveness using a two-stage sampling strategy based on fishery landings

Fisheries research, 2022-06, Vol.250, p.106266, Article 106266

2022

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Viruses roll the dice: the stochastic behavior of viral genome molecules accelerates viral adaptation at the cell and tissue levels

PLoS biology, 2015-03, Vol.13 (3), p.e1002094-e1002094

2015

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Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat

Scientific reports, 2019-03, Vol.9 (1), p.5290-5290, Article 5290

2019

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Population structure of chum salmon and selection on the markers collected for stock identification

Ecology and evolution, 2021-10, Vol.11 (20), p.13972-13985

2021

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Estimation of the Size of Genetic Bottlenecks in Cell-to-Cell Movement of Soil-Borne Wheat Mosaic Virus and the Possible Role of the Bottlenecks in Speeding Up Selection of Variations in trans-Acting Genes or Elements

Journal of Virology, 2010-02, Vol.84 (4), p.1828-1837

2010

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The empirical Bayes estimators of fine‐scale population structure in high gene flow species

Molecular ecology resources, 2017-11, Vol.17 (6), p.1210-1222

2017

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Renormalized basal metabolic rate describes the human aging process and longevity

Aging cell, 2019-08, Vol.18 (4), p.e12968-n/a

2019

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Massive Loss of Transcription Factors Promotes the Initial Diversification of Placental Mammals

International journal of molecular sciences, 2022-08, Vol.23 (17), p.9720

2022

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Evolution of Reproductive Life History in Mammals and the Associated Change of Functional Constraints

Genes, 2021-05, Vol.12 (5), p.740

2021

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Hypothesis Testing of Inclusion of the Tolerance Interval for the Assessment of Food Safety

PloS one, 2015-10, Vol.10 (10), p.e0141117-e0141117

2015

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Understanding population structure in an evolutionary context: population-specific F ST and pairwise F ST

G3 : genes - genomes - genetics, 2021-10, Vol.11 (11)

2021

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Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites

Current biology, 2017-01, Vol.27 (1), p.68-77

2017

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Molecular Evolutionary Rate Predicts Intraspecific Genetic Polymorphism and Species-Specific Selection

Genes, 2022-04, Vol.13 (4), p.708

2022

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The small heat shock protein (sHSP) genes in the silkworm, Bombyx mori, and comparative analysis with other insect sHSP genes

BMC evolutionary biology, 2009-08, Vol.9 (1), p.215, Article 215

2009

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Waves Out of the Korean Peninsula and Inter- and Intra-Species Replacements in Freshwater Fishes in Japan

Genes, 2021-02, Vol.12 (2), p.303

2021

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Multiple Isolated Transcription Factors Act as Switches and Contribute to Species Uniqueness

Genes, 2020-09, Vol.11 (10), p.1148

2020

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Bayesian inference of baseline fertility and treatment effects via a crop yield-fertility model

PloS one, 2014-11, Vol.9 (11), p.e112785-e112785

2014

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Exploratory analysis of multi‐trait coadaptations in light of population history

Ecology and evolution, 2022-03, Vol.12 (3), p.e8755-n/a

2022

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Expression map of a complete set of gustatory receptor genes in chemosensory organs of Bombyx mori

Insect biochemistry and molecular biology, 2017-03, Vol.82, p.74-82

2017

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Spatial distribution of selection pressure on a protein based on the hierarchical Bayesian model

Molecular biology and evolution, 2013-12, Vol.30 (12), p.2714-2722

2013

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Comprehensive Comparison of Self-administered Questionnaires for Measuring Quantitative Autistic Traits in Adults

Journal of autism and developmental disorders, 2014-05, Vol.44 (5), p.993-1007

2014

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Coevolution and hierarchical interactions of Tomato mosaic virus and the resistance gene Tm-1

PLoS pathogens, 2012-10, Vol.8 (10), p.e1002975-e1002975

2012

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Phylogenetic skew: an index of community diversity

Molecular ecology, 2015-02, Vol.24 (4), p.759-770

2015

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Stochastic Variational Inference for Bayesian Phylogenetics: A Case of CAT Model

Rates of Molecular Evolution Suggest Natural History of Life History Traits and a Post-K-Pg Nocturnal Bottleneck of Placentals

An R script for unbiased estimation of stocking effectiveness using a two-stage sampling strategy based on fishery landings

Viruses roll the dice: the stochastic behavior of viral genome molecules accelerates viral adaptation at the cell and tissue levels

Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat

Population structure of chum salmon and selection on the markers collected for stock identification

Estimation of the Size of Genetic Bottlenecks in Cell-to-Cell Movement of Soil-Borne Wheat Mosaic Virus and the Possible Role of the Bottlenecks in Speeding Up Selection of Variations in trans-Acting Genes or Elements

The empirical Bayes estimators of fine‐scale population structure in high gene flow species

Renormalized basal metabolic rate describes the human aging process and longevity

Massive Loss of Transcription Factors Promotes the Initial Diversification of Placental Mammals

Evolution of Reproductive Life History in Mammals and the Associated Change of Functional Constraints

Hypothesis Testing of Inclusion of the Tolerance Interval for the Assessment of Food Safety

Understanding population structure in an evolutionary context: population-specific F ST and pairwise F ST

Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites

Molecular Evolutionary Rate Predicts Intraspecific Genetic Polymorphism and Species-Specific Selection

The small heat shock protein (sHSP) genes in the silkworm, Bombyx mori, and comparative analysis with other insect sHSP genes

Waves Out of the Korean Peninsula and Inter- and Intra-Species Replacements in Freshwater Fishes in Japan

Multiple Isolated Transcription Factors Act as Switches and Contribute to Species Uniqueness

Bayesian inference of baseline fertility and treatment effects via a crop yield-fertility model

Exploratory analysis of multi‐trait coadaptations in light of population history

Expression map of a complete set of gustatory receptor genes in chemosensory organs of Bombyx mori

Spatial distribution of selection pressure on a protein based on the hierarchical Bayesian model

Comprehensive Comparison of Self-administered Questionnaires for Measuring Quantitative Autistic Traits in Adults

Coevolution and hierarchical interactions of Tomato mosaic virus and the resistance gene Tm-1

Phylogenetic skew: an index of community diversity

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