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Inferring cell type innovations by phylogenetic methods-concepts, methods, and limitations

Journal of experimental zoology. Part B, Molecular and developmental evolution, 2015-12, Vol.324 (8), p.653-661

Kin, Koryu

2015

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Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

Theory in biosciences = Theorie in den Biowissenschaften, 2012-12, Vol.131 (4), p.281-285

2012

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Evolution of Multicellular Complexity in The Dictyostelid Social Amoebas

Genes, 2021-03, Vol.12 (4), p.487

2021

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Cell-type specific RNA-Seq reveals novel roles and regulatory programs for terminally differentiated Dictyostelium cells

BMC genomics, 2018-10, Vol.19 (1), p.764-764, Article 764

2018

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A model based criterion for gene expression calls using RNA-seq data

Theory in biosciences = Theorie in den Biowissenschaften, 2013-09, Vol.132 (3), p.159-164

2013

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Unusual occurrence of domestication syndrome amongst African mole-rats: Is the naked mole-rat a domestic animal?

Frontiers in ecology and evolution, 2022-11, Vol.10

2022

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Cold climate adaptation is a plausible cause for evolution of multicellular sporulation in Dictyostelia

Scientific reports, 2020-05, Vol.10 (1), p.8797-8797, Article 8797

2020

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A novel role for dpp in the shaping of bivalve shells revealed in a conserved molluscan developmental program

Developmental biology, 2009-05, Vol.329 (1), p.152-166

2009

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Cell-type Phylogenetics and the Origin of Endometrial Stromal Cells

Cell reports (Cambridge), 2015-03, Vol.10 (8), p.1398-1409

2015

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Evolution of mammalian pregnancy and the origin of the decidual stromal cell

The International journal of developmental biology, 2014, Vol.58 (2-4), p.117

2014

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Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

BMC genomics, 2019-11, Vol.20 (1), p.890-890, Article 890

2019

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Emerging roles for diguanylate cyclase during the evolution of soma in dictyostelia

BMC ecology and evolution, 2023-10, Vol.23 (1), p.60-60, Article 60

2023

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The Transcriptomic Evolution of Mammalian Pregnancy: Gene Expression Innovations in Endometrial Stromal Fibroblasts

Genome biology and evolution, 2016-08, Vol.8 (8), p.2459-2473

2016

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Loss of the Polyketide Synthase StlB Results in Stalk Cell Overproduction in Polysphondylium violaceum

Genome biology and evolution, 2020-05, Vol.12 (5), p.674-683

2020

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Early Development of the Japanese Spiny Oyster (Saccostrea kegaki): Characterization of Some Genetic Markers

Zoological Science, 2008-05, Vol.25 (5), p.455-464

2008

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Molecular evolution of HoxA13 and the multiple origins of limbless morphologies in amphibians and reptiles

Genetics and molecular biology, 2015-09, Vol.38 (3), p.255-262

2015

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Evolution of a novel cell type in Dictyostelia required gene duplication of a cudA-like transcription factor

Current biology, 2022-01, Vol.32 (2), p.428-437.e4

2022

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Multimerization of HIF enhances transcription of target genes containing the hypoxia ancillary sequence

Biochimica et biophysica acta. Gene regulatory mechanisms, 2023-12, Vol.1866 (4), p.194963-194963, Article 194963

2023

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A well supported multi gene phylogeny of 52 dictyostelia

Molecular phylogenetics and evolution, 2019-05, Vol.134, p.66-73

2019

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Immunohistological study of the endometrial stromal fibroblasts in the opossum, Monodelphis domestica: evidence for homology with eutherian stromal fibroblasts

Biology of reproduction, 2014-05, Vol.90 (5), p.111-111

2014

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Immunohistological Study of the Endometrial Stromal Fibroblasts in the Opossum, Monodelphis domestica: Evidence for Homology with Eutherian Stromal Fibroblasts1

Biology of reproduction, 2014-05, Vol.90 (5)

2014

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Interactome and evolutionary conservation of Dictyostelid small GTPases and their direct regulators

Small GTPases, 2022, Vol.13 (1), p.239-254

2022

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Sex-specific gene expression during asexual development of Neurospora crassa

Fungal genetics and biology, 2012-07, Vol.49 (7), p.533-543

2012

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Evolution of placentation in mammals: A cell type perspective

KIn, Koryu

2015

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15-P031 Evolution of bivalve bodyplan

Mechanisms of development, 2009-08, Vol.126, p.S256-S257

2009

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Inferring cell type innovations by phylogenetic methods-concepts, methods, and limitations

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

Evolution of Multicellular Complexity in The Dictyostelid Social Amoebas

Cell-type specific RNA-Seq reveals novel roles and regulatory programs for terminally differentiated Dictyostelium cells

A model based criterion for gene expression calls using RNA-seq data

Unusual occurrence of domestication syndrome amongst African mole-rats: Is the naked mole-rat a domestic animal?

Cold climate adaptation is a plausible cause for evolution of multicellular sporulation in Dictyostelia

A novel role for dpp in the shaping of bivalve shells revealed in a conserved molluscan developmental program

Cell-type Phylogenetics and the Origin of Endometrial Stromal Cells

Evolution of mammalian pregnancy and the origin of the decidual stromal cell

Phylogeny-wide conservation and change in developmental expression, cell-type specificity and functional domains of the transcriptional regulators of social amoebas

Emerging roles for diguanylate cyclase during the evolution of soma in dictyostelia

The Transcriptomic Evolution of Mammalian Pregnancy: Gene Expression Innovations in Endometrial Stromal Fibroblasts

Loss of the Polyketide Synthase StlB Results in Stalk Cell Overproduction in Polysphondylium violaceum

Early Development of the Japanese Spiny Oyster (Saccostrea kegaki): Characterization of Some Genetic Markers

Molecular evolution of HoxA13 and the multiple origins of limbless morphologies in amphibians and reptiles

Evolution of a novel cell type in Dictyostelia required gene duplication of a cudA-like transcription factor

Multimerization of HIF enhances transcription of target genes containing the hypoxia ancillary sequence

A well supported multi gene phylogeny of 52 dictyostelia

Immunohistological study of the endometrial stromal fibroblasts in the opossum, Monodelphis domestica: evidence for homology with eutherian stromal fibroblasts

Immunohistological Study of the Endometrial Stromal Fibroblasts in the Opossum, Monodelphis domestica: Evidence for Homology with Eutherian Stromal Fibroblasts1

Interactome and evolutionary conservation of Dictyostelid small GTPases and their direct regulators

Sex-specific gene expression during asexual development of Neurospora crassa

Evolution of placentation in mammals: A cell type perspective

15-P031 Evolution of bivalve bodyplan

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