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Monte Carlo samplers for efficient network inference

PLoS computational biology, 2023-07, Vol.19 (7), p.e1011256

2023

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The Epidemiological and Clinical Characteristics of 81 Children with COVID-19 in a Pandemic Hospital in Turkey: an Observational Cohort Study

Journal of Korean Medical Science, 2020, 35(25), , pp.1-11

2020

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RNA Polymerase Dynamics and Other Single-Molecule Continuous Time Problems

Biophysical journal, 2020-02, Vol.118 (3), p.544a-544a

2020

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A first-principle mechanism for particulate aggregation and self-assembly in stratified fluids

Nature communications, 2019-12, Vol.10 (1), p.5804-8, Article 5804

2019

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Extraction of rapid kinetics from smFRET measurements using integrative detectors

Cell reports physical science, 2021-05, Vol.2 (5), p.100409, Article 100409

2021

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Bayesian Nonparametric Analysis of Transcriptional Processes

Biophysical journal, 2019-02, Vol.116 (3), p.299a-299a

2019

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Super-resolved tracking

Biophysical journal, 2022-02, Vol.121 (3), p.412a-412a

2022

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Generalizing HMMs to Continuous Time for Fast Kinetics: Hidden Markov Jump Processes

Biophysical journal, 2021-02, Vol.120 (3), p.409-423

2021

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On the symmetry properties of a random passive scalar with and without boundaries, and their connection between hot and cold states

Physica. D, 2019-12, Vol.400, p.132124, Article 132124

2019

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Multi-particle tracking in crowded environments

Biophysical journal, 2023-02, Vol.122 (3), p.128a-128a

2023

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Persisting asymmetry in the probability distribution function for a random advection–diffusion equation in impermeable channels

Physica. D, 2021-11, Vol.425, p.132930, Article 132930

2021

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Decoding gene network models and rates from smFISH data

Biophysical journal, 2022-02, Vol.121 (3), p.446a-446a

2022

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Residence time analysis of RNA polymerase transcription dynamics: A Bayesian sticky HMM approach

Biophysical journal, 2021-05, Vol.120 (9), p.1665-1679

2021

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Unravelling Gene Expression Networks and Inferring Kinetic Parameters from smFISH Data

Biophysical journal, 2021-02, Vol.120 (3), p.188a-188a

2021

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CFTR function, pathology and pharmacology at single-molecule resolution

Nature (London), 2023-04, Vol.616 (7957), p.606-614

2023

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Author Correction: CFTR function, pathology and pharmacology at singlemolecule resolution

Nature (London), 2023-05, Vol.617 (7961), p.E11-E11

2023

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Simultaneous single particle tracking, phase retrieval and PSF reconstruction

Biophysical journal, 2023-02, Vol.122 (3), p.280a-280a

2023

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Single molecule reaction-diffusion with single photon FCS-FRET

Biophysical journal, 2022-02, Vol.121 (3), p.432a-432a

2022

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Author Correction: CFTR function, pathology and pharmacology at single-molecule resolution

Nature (London), 2023-05, Vol.617 (7961), p.E11-E11

2023

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Investigation of Chlamydophila pneumoniae seropositivity and risk factors in patients with atherosclerotic vascular disease in Sivas, Turkey

Mikrobiyoloji bülteni, 2012-01, Vol.46 (1), p.156-158

2012

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A Continuous Time Representation of smFRET for the Extraction of Rapid Kinetics

Biophysical journal, 2021-02, Vol.120 (3), p.186a-186a

2021

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Single-Molecule Imaging of Integral Membrane Protein Dynamics and Function

Annual review of biophysics, 2024-07, Vol.53 (1), p.427-453

2024

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Toward merging image analysis and gene network discovery from fluorescent in situ hybridization data

Biophysical journal, 2023-02, Vol.122 (3), p.68a-69a

2023

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Recovering true FRET efficiencies from smFRET investigations requires triplet state mitigation

Nature methods, 2024-07, Vol.21 (7), p.1222-1230

2024

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BNP-Track: a framework for superresolved tracking

Nature methods, 2024-09, Vol.21 (9), p.1716-1724

2024

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Monte Carlo samplers for efficient network inference

The Epidemiological and Clinical Characteristics of 81 Children with COVID-19 in a Pandemic Hospital in Turkey: an Observational Cohort Study

RNA Polymerase Dynamics and Other Single-Molecule Continuous Time Problems

A first-principle mechanism for particulate aggregation and self-assembly in stratified fluids

Extraction of rapid kinetics from smFRET measurements using integrative detectors

Bayesian Nonparametric Analysis of Transcriptional Processes

Super-resolved tracking

Generalizing HMMs to Continuous Time for Fast Kinetics: Hidden Markov Jump Processes

On the symmetry properties of a random passive scalar with and without boundaries, and their connection between hot and cold states

Multi-particle tracking in crowded environments

Persisting asymmetry in the probability distribution function for a random advection–diffusion equation in impermeable channels

Decoding gene network models and rates from smFISH data

Residence time analysis of RNA polymerase transcription dynamics: A Bayesian sticky HMM approach

Unravelling Gene Expression Networks and Inferring Kinetic Parameters from smFISH Data

CFTR function, pathology and pharmacology at single-molecule resolution

Author Correction: CFTR function, pathology and pharmacology at singlemolecule resolution

Simultaneous single particle tracking, phase retrieval and PSF reconstruction

Single molecule reaction-diffusion with single photon FCS-FRET

Author Correction: CFTR function, pathology and pharmacology at single-molecule resolution

Investigation of Chlamydophila pneumoniae seropositivity and risk factors in patients with atherosclerotic vascular disease in Sivas, Turkey

A Continuous Time Representation of smFRET for the Extraction of Rapid Kinetics

Single-Molecule Imaging of Integral Membrane Protein Dynamics and Function

Toward merging image analysis and gene network discovery from fluorescent in situ hybridization data

Recovering true FRET efficiencies from smFRET investigations requires triplet state mitigation

BNP-Track: a framework for superresolved tracking

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