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A Review of Graph and Network Complexity from an Algorithmic Information Perspective

Entropy (Basel, Switzerland), 2018-07, Vol.20 (8), p.551

2018

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A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity

Entropy (Basel, Switzerland), 2018-08, Vol.20 (8), p.605

2018

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scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences

PloS one, 2023-02, Vol.18 (2), p.e0281315-e0281315

2023

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Algorithmic Information Dynamics: A Computational Approach to Causality With Applications to Living Systems

2023

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LSD-induced increase of Ising temperature and algorithmic complexity of brain dynamics

PLoS computational biology, 2023-02, Vol.19 (2), p.e1010811-e1010811

2023

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Dynamics and heterogeneity of brain damage in multiple sclerosis

PLoS computational biology, 2017-10, Vol.13 (10), p.e1005757-e1005757

2017

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Systems Toxicology: Systematic Approach to Predict Toxicity

Current pharmaceutical design, 2016-12, Vol.22 (46), p.6911

2016

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Dynamic probabilistic threshold networks to infer signaling pathways from time-course perturbation data

BMC bioinformatics, 2014-07, Vol.15 (1), p.250-250, Article 250

2014

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Methods of information theory and algorithmic complexity for network biology

Seminars in cell & developmental biology, 2016-03, Vol.51, p.32-43

2016

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Low-algorithmic-complexity entropy-deceiving graphs

Physical review. E, 2017-07, Vol.96 (1-1), p.012308-012308, Article 012308

2017

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Exhaustion of CD4+ T-cells mediated by the Kynurenine Pathway in Melanoma

Scientific reports, 2019-08, Vol.9 (1), p.12150-11, Article 12150

2019

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The Thermodynamics of Network Coding, and an Algorithmic Refinement of the Principle of Maximum Entropy

Entropy (Basel, Switzerland), 2019-06, Vol.21 (6), p.560

2019

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Risk-adjusted benchmarking of long-term overall survival in patients with HER2-positive early-stage Breast cancer: A Swedish retrospective cohort study

Breast (Edinburgh), 2023-08, Vol.70, p.18-24

2023

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Causal deconvolution by algorithmic generative models

Nature machine intelligence, 2019-01, Vol.1 (1), p.58-66

2019

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MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis

Proceedings of the National Academy of Sciences - PNAS, 2019-05, Vol.116 (19), p.9671-9676

2019

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On the salient limitations of the methods of assembly theory and their classification of molecular biosignatures

NPJ systems biology and applications, 2024-08, Vol.10 (1), p.82-5, Article 82

2024

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HiDi: an efficient reverse engineering schema for large-scale dynamic regulatory network reconstruction using adaptive differentiation

Bioinformatics (Oxford, England), 2017-12, Vol.33 (24), p.3964-3972

2017

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Symmetry and Correspondence of Algorithmic Complexity over Geometric, Spatial and Topological Representations

Entropy (Basel, Switzerland), 2018-07, Vol.20 (7), p.534

2018

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Network modules uncover mechanisms of skeletal muscle dysfunction in COPD patients

Journal of translational medicine, 2018-02, Vol.16 (1), p.34-34, Article 34

2018

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Planning for return to work during the first year after breast cancer metastasis: A Swedish cohort study

Cancer medicine (Malden, MA), 2023-05, Vol.12 (9), p.10840-10850

2023

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Phosphatase inhibitor PPP1R11 modulates resistance of human T cells toward Treg‐mediated suppression of cytokine expression

Journal of leukocyte biology, 2019-08, Vol.106 (2), p.413-430

2019

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Use of sickness benefits by patients with metastatic breast cancer—A Swedish cohort study

European journal of cancer care, 2022-09, Vol.31 (5), p.e13626-n/a

2022

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Evaluating network inference methods in terms of their ability to preserve the topology and complexity of genetic networks

Seminars in cell & developmental biology, 2016-03, Vol.51, p.44-52

2016

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An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

iScience, 2019-09, Vol.19, p.1160-1172

2019

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Molecular Mechanism of Signal Perception and Integration by the Innate Immune Sensor Retinoic Acid-inducible Gene-I (RIG-I)

The Journal of biological chemistry, 2011-08, Vol.286 (31), p.27278-27287

2011

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A Review of Graph and Network Complexity from an Algorithmic Information Perspective

A Decomposition Method for Global Evaluation of Shannon Entropy and Local Estimations of Algorithmic Complexity

scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences

Algorithmic Information Dynamics: A Computational Approach to Causality With Applications to Living Systems

LSD-induced increase of Ising temperature and algorithmic complexity of brain dynamics

Dynamics and heterogeneity of brain damage in multiple sclerosis

Systems Toxicology: Systematic Approach to Predict Toxicity

Dynamic probabilistic threshold networks to infer signaling pathways from time-course perturbation data

Methods of information theory and algorithmic complexity for network biology

Low-algorithmic-complexity entropy-deceiving graphs

Exhaustion of CD4+ T-cells mediated by the Kynurenine Pathway in Melanoma

The Thermodynamics of Network Coding, and an Algorithmic Refinement of the Principle of Maximum Entropy

Risk-adjusted benchmarking of long-term overall survival in patients with HER2-positive early-stage Breast cancer: A Swedish retrospective cohort study

Causal deconvolution by algorithmic generative models

MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis

On the salient limitations of the methods of assembly theory and their classification of molecular biosignatures

HiDi: an efficient reverse engineering schema for large-scale dynamic regulatory network reconstruction using adaptive differentiation

Symmetry and Correspondence of Algorithmic Complexity over Geometric, Spatial and Topological Representations

Network modules uncover mechanisms of skeletal muscle dysfunction in COPD patients

Planning for return to work during the first year after breast cancer metastasis: A Swedish cohort study

Phosphatase inhibitor PPP1R11 modulates resistance of human T cells toward Treg‐mediated suppression of cytokine expression

Use of sickness benefits by patients with metastatic breast cancer—A Swedish cohort study

Evaluating network inference methods in terms of their ability to preserve the topology and complexity of genetic networks

An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems

Molecular Mechanism of Signal Perception and Integration by the Innate Immune Sensor Retinoic Acid-inducible Gene-I (RIG-I)

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