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Predicting commercially available antiviral drugs that may act on the novel coronavirus (SARS-CoV-2) through a drug-target interaction deep learning model

Computational and structural biotechnology journal, 2020-01, Vol.18, p.784-790

2020

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Type I interferons and the cytokine TNF cooperatively reprogram the macrophage epigenome to promote inflammatory activation

Nature immunology, 2017-10, Vol.18 (10), p.1104

2017

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IFN-γ selectively suppresses a subset of TLR4-activated genes and enhancers to potentiate macrophage activation

Nature communications, 2019-07, Vol.10 (1), p.3320-14, Article 3320

2019

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MiR-34a and miR-34b/c have distinct effects on the suppression of lung adenocarcinomas

Experimental and Molecular Medicine, 2019, 51(0), , pp.1-10

2019

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The 19S proteasome is directly involved in the regulation of heterochromatin spreading in fission yeast

The Journal of biological chemistry, 2017-10, Vol.292 (41), p.17144-17155

2017

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Activation of OSM-STAT3 Epigenetically Regulates Tumor-Promoting Transcriptional Programs in Cervical Cancer

Cancers, 2022-12, Vol.14 (24), p.6090

2022

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Tiotropium is Predicted to be a Promising Drug for COVID-19 Through Transcriptome-Based Comprehensive Molecular Pathway Analysis

Viruses, 2020-07, Vol.12 (7), p.776

2020

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The transcription factor Foxp1 preserves integrity of an active Foxp3 locus in extrathymic Treg cells

Nature communications, 2018-10, Vol.9 (1), p.4473-14, Article 4473

2018

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Characterization of transcriptome diversity and in vitro behavior of primary human high-risk breast cells

Scientific reports, 2022-04, Vol.12 (1), p.6159-6159, Article 6159

2022

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Cancer-associated fibroblasts activated by miR-196a promote the migration and invasion of lung cancer cells

Cancer letters, 2021-06, Vol.508, p.92-103

2021

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RNA variant identification discrepancy among splice-aware alignment algorithms

PloS one, 2018-08, Vol.13 (8), p.e0201822-e0201822

2018

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Arsenic hexoxide has differential effects on cell proliferation and genome-wide gene expression in human primary mammary epithelial and MCF7 cells

Scientific reports, 2021-02, Vol.11 (1), p.3761-3761, Article 3761

2021

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Immune transcriptomes of highly exposed SARS-CoV-2 asymptomatic seropositive versus seronegative individuals from the Ischgl community

Scientific reports, 2021-02, Vol.11 (1), p.4243-10, Article 4243

2021

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A basal-like breast cancer-specific role for SRF-IL6 in YAP-induced cancer stemness

Nature communications, 2015-12, Vol.6 (1), p.10186-10186, Article 10186

2015

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Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF

Nature communications, 2022-05, Vol.13 (1), p.2429-2429, Article 2429

2022

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SMARCA4 oncogenic potential via IRAK1 enhancer to activate Gankyrin and AKR1B10 in liver cancer

Oncogene, 2021-07, Vol.40 (28), p.4652-4662

2021

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Predicting FOXM1-Mediated Gene Regulation through the Analysis of Genome-Wide FOXM1 Binding Sites in MCF-7, K562, SK-N-SH, GM12878 and ECC-1 Cell Lines

International journal of molecular sciences, 2020-08, Vol.21 (17), p.6141

2020

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Target-Centered Drug Repurposing Predictions of Human Angiotensin-Converting Enzyme 2 (ACE2) and Transmembrane Protease Serine Subtype 2 (TMPRSS2) Interacting Approved Drugs for Coronavirus Disease 2019 (COVID-19) Treatment through a Drug-Target Interaction Deep Learning Model

Viruses, 2020-11, Vol.12 (11), p.1325

2020

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Comprehensive meta-analysis of Signal Transducers and Activators of Transcription (STAT) genomic binding patterns discerns cell-specific cis-regulatory modules

BMC genomics, 2013-01, Vol.14 (1), p.4-4

2013

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Integration of transcriptomics, proteomics and metabolomics identifies biomarkers for pulmonary injury by polyhexamethylene guanidine phosphate (PHMG-p), a humidifier disinfectant, in rats

Archives of toxicology, 2020-03, Vol.94 (3), p.887-909

2020

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Genome-wide blood DNA methylation analysis in patients with delayed cerebral ischemia after subarachnoid hemorrhage

Scientific reports, 2020-07, Vol.10 (1), p.11419-11419, Article 11419

2020

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The Ino80 complex mediates epigenetic centromere propagation via active removal of histone H3

Nature communications, 2017-09, Vol.8 (1), p.529-10, Article 529

2017

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RNA Editing Enzyme ADAR1 Suppresses the Mobility of Cancer Cells via ARPIN

Molecules and Cells, 2023, 46(6), , pp.351-359

2023

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miR-199a and miR-199b facilitate diffuse gastric cancer progression by targeting Frizzled-6

Scientific reports, 2023-10, Vol.13 (1), p.17480-17480, Article 17480

2023

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MarkerCount: A stable, count-based cell type identifier for single-cell RNA-seq experiments

Computational and structural biotechnology journal, 2022-01, Vol.20, p.3120-3132

2022

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Predicting commercially available antiviral drugs that may act on the novel coronavirus (SARS-CoV-2) through a drug-target interaction deep learning model

Type I interferons and the cytokine TNF cooperatively reprogram the macrophage epigenome to promote inflammatory activation

IFN-γ selectively suppresses a subset of TLR4-activated genes and enhancers to potentiate macrophage activation

MiR-34a and miR-34b/c have distinct effects on the suppression of lung adenocarcinomas

The 19S proteasome is directly involved in the regulation of heterochromatin spreading in fission yeast

Activation of OSM-STAT3 Epigenetically Regulates Tumor-Promoting Transcriptional Programs in Cervical Cancer

Tiotropium is Predicted to be a Promising Drug for COVID-19 Through Transcriptome-Based Comprehensive Molecular Pathway Analysis

The transcription factor Foxp1 preserves integrity of an active Foxp3 locus in extrathymic Treg cells

Characterization of transcriptome diversity and in vitro behavior of primary human high-risk breast cells

Cancer-associated fibroblasts activated by miR-196a promote the migration and invasion of lung cancer cells

RNA variant identification discrepancy among splice-aware alignment algorithms

Arsenic hexoxide has differential effects on cell proliferation and genome-wide gene expression in human primary mammary epithelial and MCF7 cells

Immune transcriptomes of highly exposed SARS-CoV-2 asymptomatic seropositive versus seronegative individuals from the Ischgl community

A basal-like breast cancer-specific role for SRF-IL6 in YAP-induced cancer stemness

Enhancer RNAs stimulate Pol II pause release by harnessing multivalent interactions to NELF

SMARCA4 oncogenic potential via IRAK1 enhancer to activate Gankyrin and AKR1B10 in liver cancer

Predicting FOXM1-Mediated Gene Regulation through the Analysis of Genome-Wide FOXM1 Binding Sites in MCF-7, K562, SK-N-SH, GM12878 and ECC-1 Cell Lines

Target-Centered Drug Repurposing Predictions of Human Angiotensin-Converting Enzyme 2 (ACE2) and Transmembrane Protease Serine Subtype 2 (TMPRSS2) Interacting Approved Drugs for Coronavirus Disease 2019 (COVID-19) Treatment through a Drug-Target Interaction Deep Learning Model

Comprehensive meta-analysis of Signal Transducers and Activators of Transcription (STAT) genomic binding patterns discerns cell-specific cis-regulatory modules

Integration of transcriptomics, proteomics and metabolomics identifies biomarkers for pulmonary injury by polyhexamethylene guanidine phosphate (PHMG-p), a humidifier disinfectant, in rats

Genome-wide blood DNA methylation analysis in patients with delayed cerebral ischemia after subarachnoid hemorrhage

The Ino80 complex mediates epigenetic centromere propagation via active removal of histone H3

RNA Editing Enzyme ADAR1 Suppresses the Mobility of Cancer Cells via ARPIN

miR-199a and miR-199b facilitate diffuse gastric cancer progression by targeting Frizzled-6

MarkerCount: A stable, count-based cell type identifier for single-cell RNA-seq experiments

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