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Abolishing storage lipids induces protein misfolding and stress responses in Yarrowia lipolytica

Journal of industrial microbiology & biotechnology, 2023-02, Vol.50 (1)

2023

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Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast

Proceedings of the National Academy of Sciences - PNAS, 2021-12, Vol.118 (51), p.1-9

2021

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Advances in constraint-based models: methods for improved predictive power based on resource allocation constraints

Current opinion in microbiology, 2022-08, Vol.68, p.102168-102168, Article 102168

Kerkhoven, Eduard J

2022

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Advances in genome-scale metabolic models of industrially important fungi

Current opinion in biotechnology, 2023-12, Vol.84, p.103005-103005, Article 103005

2023

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Advancing metabolic engineering of Yarrowia lipolytica using the CRISPR/Cas system

Applied microbiology and biotechnology, 2018-11, Vol.102 (22), p.9541-9548

2018

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Applications of computational modeling in metabolic engineering of yeast

FEMS yeast research, 2015-02, Vol.15 (1), p.1-13

2015

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An atlas of human metabolism

Science signaling, 2020-03, Vol.13 (624)

2020

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Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Nature communications, 2020-10, Vol.11 (1), p.5443-5443, Article 5443

2020

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Barriers and opportunities in bio-based production of hydrocarbons

Nature energy, 2018-11, Vol.3 (11), p.925-935

2018

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Biosynthesis of Hesperetin, Homoeriodictyol, and Homohesperetin in a Transcriptomics-Driven Engineered Strain of IStreptomyces albidoflavus/I

International journal of molecular sciences, 2024-04, Vol.25 (7)

2024

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Biosynthesis of Hesperetin, Homoeriodictyol, and Homohesperetin in a Transcriptomics-Driven Engineered Strain of Streptomyces albidoflavus

International journal of molecular sciences, 2024-04, Vol.25 (7), p.4053

2024

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Chapter Three - The Silicon Trypanosome: A Test Case of Iterative Model Extension in Systems Biology

Advances in microbial physiology, 2014-01, Vol.64, p.115-143

2014

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A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Nature communications, 2019-08, Vol.10 (1), p.3586-13, Article 3586

2019

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Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

iScience, 2021-11, Vol.24 (11), p.103294-103294, Article 103294

2021

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Constraint-Based Modeling of Yeast Mitochondria Reveals the Dynamics of Protein Import and Iron-Sulfur Cluster Biogenesis

SSRN Electronic Journal

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Crystal Structure of an Arginase-like Protein from Trypanosoma brucei That Evolved without a Binuclear Manganese Cluster

Biochemistry (Easton), 2015-01, Vol.54 (2), p.458-471

2015

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Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction

Nature catalysis, 2022-08, Vol.5 (8), p.662-672

2022

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A domino effect in drug action: from metabolic assault towards parasite differentiation

Molecular microbiology, 2011-01, Vol.79 (1), p.94-108

2011

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Dynamic modelling under uncertainty: the case of Trypanosoma brucei energy metabolism

PLoS computational biology, 2012-01, Vol.8 (1), p.e1002352-e1002352

2012

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Editorial: Multi-Omics Technologies for Optimizing Synthetic Biomanufacturing

Frontiers in bioengineering and biotechnology, 2021-12, Vol.9, p.818010-818010

2021

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Engineering of Saccharomyces cerevisiae for enhanced metabolic robustness and L-lactic acid production from lignocellulosic biomass

Metabolic engineering, 2024-07, Vol.84, p.23-33

2024

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Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

iScience, 2020-09, Vol.23 (9), p.101525-101525, Article 101525

2020

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Erratum to: A molecular genetic toolbox for Yarrowia lipolytica

Biotechnology for biofuels, 2017-02, Vol.10 (1), Article 45

2017

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Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species

FEMS yeast research, 2021-02, Vol.21 (1), p.1

2021

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Generation and analysis of context-specific genome-scale metabolic models derived from-cell data

Proceedings of the National Academy of Sciences - PNAS, 2023-02, Vol.120 (6)

2023

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Abolishing storage lipids induces protein misfolding and stress responses in Yarrowia lipolytica

Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast

Advances in constraint-based models: methods for improved predictive power based on resource allocation constraints

Advances in genome-scale metabolic models of industrially important fungi

Advancing metabolic engineering of Yarrowia lipolytica using the CRISPR/Cas system

Applications of computational modeling in metabolic engineering of yeast

An atlas of human metabolism

Author Correction: A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Barriers and opportunities in bio-based production of hydrocarbons

Biosynthesis of Hesperetin, Homoeriodictyol, and Homohesperetin in a Transcriptomics-Driven Engineered Strain of IStreptomyces albidoflavus/I

Biosynthesis of Hesperetin, Homoeriodictyol, and Homohesperetin in a Transcriptomics-Driven Engineered Strain of Streptomyces albidoflavus

Chapter Three - The Silicon Trypanosome: A Test Case of Iterative Model Extension in Systems Biology

A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism

Constraint-based modeling of yeast mitochondria reveals the dynamics of protein import and iron-sulfur cluster biogenesis

Constraint-Based Modeling of Yeast Mitochondria Reveals the Dynamics of Protein Import and Iron-Sulfur Cluster Biogenesis

Crystal Structure of an Arginase-like Protein from Trypanosoma brucei That Evolved without a Binuclear Manganese Cluster

Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction

A domino effect in drug action: from metabolic assault towards parasite differentiation

Dynamic modelling under uncertainty: the case of Trypanosoma brucei energy metabolism

Editorial: Multi-Omics Technologies for Optimizing Synthetic Biomanufacturing

Engineering of Saccharomyces cerevisiae for enhanced metabolic robustness and L-lactic acid production from lignocellulosic biomass

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

Erratum to: A molecular genetic toolbox for Yarrowia lipolytica

Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species

Generation and analysis of context-specific genome-scale metabolic models derived from-cell data

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