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Integration of machine learning and genome-scale metabolic modeling identifies multi-omics biomarkers for radiation resistance

Nature communications, 2021-05, Vol.12 (1), p.2700-2700, Article 2700

2021

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Agent-based modeling of morphogenetic systems: Advantages and challenges

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006577-e1006577

2019

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Dynamic intercellular transport modulates the spatial patterning of differentiation during early neural commitment

Nature communications, 2018-10, Vol.9 (1), p.4111-13, Article 4111

2018

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A model of redox kinetics implicates the thiol proteome in cellular hydrogen peroxide responses

Antioxidants & redox signaling, 2010-09, Vol.13 (6), p.731-743

2010

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iCLOTS: open-source, artificial intelligence-enabled software for analyses of blood cells in microfluidic and microscopy-based assays

Nature communications, 2023-08, Vol.14 (1), p.5022-16, Article 5022

2023

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Oscillatory IL-2 stimulus reveals pertinent signaling timescales of T cell responsiveness

PloS one, 2018-09, Vol.13 (9), p.e0203759-e0203759

2018

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Investigation of MSC potency metrics via integration of imaging modalities with lipidomic characterization

Cell reports (Cambridge), 2024-08, Vol.43 (8), p.114579, Article 114579

2024

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Spatial pattern dynamics of 3D stem cell loss of pluripotency via rules-based computational modeling

PLoS computational biology, 2013-03, Vol.9 (3), p.e1002952-e1002952

2013

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An automated programmable platform enabling multiplex dynamic stimuli delivery and cellular response monitoring for high-throughput suspension single-cell signaling studies

Lab on a chip, 2015-01, Vol.15 (6), p.1497-1507

2015

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Author Correction: Dynamic intercellular transport modulates the spatial patterning of differentiation during early neural commitment

Nature communications, 2018-11, Vol.9 (1), p.4901-1, Article 4901

2018

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Perspective: The promise of multi-cellular engineered living systems

APL bioengineering, 2018-12, Vol.2 (4), p.040901-040901

2018

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MTHFD2 Blockade Enhances the Efficacy of β-Lapachone Chemotherapy With Ionizing Radiation in Head and Neck Squamous Cell Cancer

Frontiers in oncology, 2020-11, Vol.10, p.536377-536377

2020

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Trans-spliced Cas9 allows cleavage of HBB and CCR5 genes in human cells using compact expression cassettes

Scientific reports, 2015-07, Vol.5 (1), p.10777-10777, Article 10777

2015

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Dynamic Redox Regulation of IL-4 Signaling

PLoS computational biology, 2015-11, Vol.11 (11), p.e1004582-e1004582

2015

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Identification of Distinct, Quantitative Pattern Classes from Emergent Tissue-Scale hiPSC Bioelectric Properties

Cells (Basel, Switzerland), 2024-07, Vol.13 (13), p.1136

2024

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Single-Cell Kinetic Modeling of β-Lapachone Metabolism in Head and Neck Squamous Cell Carcinoma

Antioxidants, 2023-03, Vol.12 (3), p.741

2023

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Redox integration of signaling and metabolism in a head and neck cancer model of radiation resistance using COSMRO

Frontiers in oncology, 2023-01, Vol.12, p.946320

2023

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A switching mechanism in doxorubicin bioactivation can be exploited to control doxorubicin toxicity

PLoS computational biology, 2011-09, Vol.7 (9), p.e1002151

2011

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Gene expression signatures of extracellular matrix and growth factors during embryonic stem cell differentiation

PloS one, 2012-10, Vol.7 (10), p.e42580-e42580

2012

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Kinetic Modeling of ABCG2 Transporter Heterogeneity: A Quantitative, Single-Cell Analysis of the Side Population Assay

PLoS computational biology, 2016-11, Vol.12 (11), p.e1005188

2016

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Spatially-resolved intracellular sensing of hydrogen peroxide in living cells

Scientific reports, 2015-11, Vol.5 (1), p.16929-16929, Article 16929

2015

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Peroxiredoxins in Cancer and Response to Radiation Therapies

Antioxidants, 2019-01, Vol.8 (1), p.11

2019

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Calcium Dynamics of Ex Vivo Long-Term Cultured CD8+ T Cells Are Regulated by Changes in Redox Metabolism

PloS one, 2016-08, Vol.11 (8), p.e0159248-e0159248

2016

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Purinergic signaling and purine base metabolism at the crossroads between immunity, metabolism, and cancer: A review

Immunomedicine, 2023-06, Vol.3 (1-2), p.n/a

2023

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Nanoparticle-induced oxidation of corona proteins initiates an oxidative stress response in cells

Nanoscale, 2017-06, Vol.9 (22), p.7595-7601

2017

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Integration of machine learning and genome-scale metabolic modeling identifies multi-omics biomarkers for radiation resistance

Agent-based modeling of morphogenetic systems: Advantages and challenges

Dynamic intercellular transport modulates the spatial patterning of differentiation during early neural commitment

A model of redox kinetics implicates the thiol proteome in cellular hydrogen peroxide responses

iCLOTS: open-source, artificial intelligence-enabled software for analyses of blood cells in microfluidic and microscopy-based assays

Oscillatory IL-2 stimulus reveals pertinent signaling timescales of T cell responsiveness

Investigation of MSC potency metrics via integration of imaging modalities with lipidomic characterization

Spatial pattern dynamics of 3D stem cell loss of pluripotency via rules-based computational modeling

An automated programmable platform enabling multiplex dynamic stimuli delivery and cellular response monitoring for high-throughput suspension single-cell signaling studies

Author Correction: Dynamic intercellular transport modulates the spatial patterning of differentiation during early neural commitment

Perspective: The promise of multi-cellular engineered living systems

MTHFD2 Blockade Enhances the Efficacy of β-Lapachone Chemotherapy With Ionizing Radiation in Head and Neck Squamous Cell Cancer

Trans-spliced Cas9 allows cleavage of HBB and CCR5 genes in human cells using compact expression cassettes

Dynamic Redox Regulation of IL-4 Signaling

Identification of Distinct, Quantitative Pattern Classes from Emergent Tissue-Scale hiPSC Bioelectric Properties

Single-Cell Kinetic Modeling of β-Lapachone Metabolism in Head and Neck Squamous Cell Carcinoma

Redox integration of signaling and metabolism in a head and neck cancer model of radiation resistance using COSMRO

A switching mechanism in doxorubicin bioactivation can be exploited to control doxorubicin toxicity

Gene expression signatures of extracellular matrix and growth factors during embryonic stem cell differentiation

Kinetic Modeling of ABCG2 Transporter Heterogeneity: A Quantitative, Single-Cell Analysis of the Side Population Assay

Spatially-resolved intracellular sensing of hydrogen peroxide in living cells

Peroxiredoxins in Cancer and Response to Radiation Therapies

Calcium Dynamics of Ex Vivo Long-Term Cultured CD8+ T Cells Are Regulated by Changes in Redox Metabolism

Purinergic signaling and purine base metabolism at the crossroads between immunity, metabolism, and cancer: A review

Nanoparticle-induced oxidation of corona proteins initiates an oxidative stress response in cells

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