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Cross-species regulatory sequence activity prediction

PLoS computational biology, 2020-07, Vol.16 (7), p.e1008050-e1008050

2020

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scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks

Nature methods, 2022-09, Vol.19 (9), p.1088-1096

2022

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Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

Genome research, 2016-07, Vol.26 (7), p.990-999

2016

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The genetic and biochemical determinants of mRNA degradation rates in mammals

Genome Biology, 2022-11, Vol.23 (1), p.245-28, Article 245

2022

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Predicting 3D genome folding from DNA sequence with Akita

Nature methods, 2020-11, Vol.17 (11), p.1111-1117

2020

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Angular Momentum Fine Structure in InP/ZnSe Quantum Dots

The journal of physical chemistry letters, 2024-06, Vol.15 (24), p.6279-6285

Kelley, David F.

2024

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Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells

Cell, 2013-05, Vol.153 (5), p.1149-1163

2013

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Effective gene expression prediction from sequence by integrating long-range interactions

Nature methods, 2021-10, Vol.18 (10), p.1196-1203

2021

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Spectroscopic Effects of Lattice Strain in InP/ZnSe and InP/ZnS Nanocrystals

Journal of physical chemistry. C, 2020-10, Vol.124 (41), p.22839-22844

2020

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Semisupervised adversarial neural networks for single-cell classification

Genome research, 2021-10, Vol.31 (10), p.1781-1793

2021

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Sequential regulatory activity prediction across chromosomes with convolutional neural networks

Genome research, 2018-05, Vol.28 (5), p.739-750

2018

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Comment on “Dependence of the Fluorescent Lifetime τ on the Concentration at High Dilution”

The journal of physical chemistry letters, 2022-12, Vol.13 (51), p.11942-11945

2022

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Quake: quality-aware detection and correction of sequencing errors

Genome biology, 2010-01, Vol.11 (11), p.R116-R116, Article R116

2010

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Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging

Genome research, 2019-12, Vol.29 (12), p.2088-2103

2019

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Clinical Practice Guideline: Sudden Hearing Loss (Update)

Otolaryngology-head and neck surgery, 2019-08, Vol.161 (1_suppl), p.S1-S45

2019

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Widespread RNA binding by chromatin-associated proteins

Genome Biology, 2016-02, Vol.17 (1), p.28-28, Article 28

2016

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Author Correction: scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks

Nature methods, 2023, Vol.20 (1), p.162-162

2023

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Lattice Strain Limit for Uniform Shell Deposition in Zincblende CdSe/CdS Quantum Dots

The journal of physical chemistry letters, 2015-05, Vol.6 (9), p.1559-1562

2015

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Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

Nature structural & molecular biology, 2014-02, Vol.21 (2), p.198-206

2014

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Acetyl CoA Carboxylase Inhibition Reduces Hepatic Steatosis but Elevates Plasma Triglycerides in Mice and Humans: A Bedside to Bench Investigation

Cell metabolism, 2017-08, Vol.26 (2), p.394-406.e6

2017

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What Does the Transient Absorption Spectrum of CdSe Quantum Dots Measure?

Journal of physical chemistry. C, 2020-04, Vol.124 (15), p.8448-8455

2020

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Role of Surface States in Silver-Doped CdSe and CdSe/CdS Quantum Dots

Journal of physical chemistry. C, 2018-05, Vol.122 (19), p.10627-10636

2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Nature protocols, 2012-03, Vol.7 (3), p.562-578

2012

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Extinction Coefficients, Oscillator Strengths, and Radiative Lifetimes of CdSe, CdTe, and CdTe/CdSe Nanocrystals

Journal of physical chemistry. C, 2013-10, Vol.117 (39), p.20268-20279

2013

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Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions

Genome biology, 2014-12, Vol.15 (12), p.537-537, Article 537

2014

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Cross-species regulatory sequence activity prediction

scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

The genetic and biochemical determinants of mRNA degradation rates in mammals

Predicting 3D genome folding from DNA sequence with Akita

Angular Momentum Fine Structure in InP/ZnSe Quantum Dots

Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells

Effective gene expression prediction from sequence by integrating long-range interactions

Spectroscopic Effects of Lattice Strain in InP/ZnSe and InP/ZnS Nanocrystals

Semisupervised adversarial neural networks for single-cell classification

Sequential regulatory activity prediction across chromosomes with convolutional neural networks

Comment on “Dependence of the Fluorescent Lifetime τ on the Concentration at High Dilution”

Quake: quality-aware detection and correction of sequencing errors

Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging

Clinical Practice Guideline: Sudden Hearing Loss (Update)

Widespread RNA binding by chromatin-associated proteins

Author Correction: scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks

Lattice Strain Limit for Uniform Shell Deposition in Zincblende CdSe/CdS Quantum Dots

Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre

Acetyl CoA Carboxylase Inhibition Reduces Hepatic Steatosis but Elevates Plasma Triglycerides in Mice and Humans: A Bedside to Bench Investigation

What Does the Transient Absorption Spectrum of CdSe Quantum Dots Measure?

Role of Surface States in Silver-Doped CdSe and CdSe/CdS Quantum Dots

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Extinction Coefficients, Oscillator Strengths, and Radiative Lifetimes of CdSe, CdTe, and CdTe/CdSe Nanocrystals

Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions

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