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Modeling in higher dimensions to improve diagnostic testing accuracy: Theory and examples for multiplex saliva-based SARS-CoV-2 antibody assays

PloS one, 2023-03, Vol.18 (3), p.e0280823-e0280823

2023

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Prevalence estimation and optimal classification methods to account for time dependence in antibody levels

Journal of theoretical biology, 2023-02, Vol.559, p.111375-111375, Article 111375

2023

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Combining Fragment-Ion and Neutral-Loss Matching during Mass Spectral Library Searching: A New General Purpose Algorithm Applicable to Illicit Drug Identification

Analytical chemistry (Washington), 2017-12, Vol.89 (24), p.13261-13268

2017

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Spatially-dependent model for rods and cones in the retina

Journal of theoretical biology, 2024-02, Vol.579, p.111687-111687, Article 111687

2024

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Predicting Kováts Retention Indices Using Graph Neural Networks

Journal of Chromatography A, 2021-06, Vol.1646, p.462100, Article 462100

2021

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Incorporating measurement variability when comparing sets of high-resolution mass spectra

Analytica chimica acta, 2022-10, Vol.1230, p.340247-340247, Article 340247

2022

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Serial flow cytometry in an inertial focusing optofluidic microchip for direct assessment of measurement variations

Lab on a chip, 2022-08, Vol.22 (17), p.3217-3228

2022

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Reproducibility in cytometry: Signals analysis and its connection to uncertainty quantification

PloS one, 2023-12, Vol.18 (12), p.e0295502-e0295502

2023

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Binding, brightness, or noise? Extracting temperature-dependent properties of dye bound to DNA

Biophysical journal, 2023-04, Vol.122 (7), p.1364-1375

2023

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Classification under uncertainty: data analysis for diagnostic antibody testing

Mathematical medicine and biology, 2021-09, Vol.38 (3), p.396-416

2021

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Failure Mechanisms in DNA Self-Assembly: Barriers to Single-Fold Yield

ACS nano, 2021-02, Vol.15 (2), p.3284-3294

2021

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Optimal classification and generalized prevalence estimates for diagnostic settings with more than two classes

Mathematical biosciences, 2023-04, Vol.358, p.108982-108982, Article 108982

2023

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Optofluidic flow meter for sub-nanoliter per minute flow measurements

Journal of biomedical optics, 2022-01, Vol.27 (1), p.017001-017001

2022

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Foundations of modeling in cryobiology—II: Heat and mass transport in bulk and at cell membrane and ice-liquid interfaces

Cryobiology, 2019-12, Vol.91, p.3-17

2019

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Dynamic Measurement of Nanoflows: Realization of an Optofluidic Flow Meter to the Nanoliter-per-Minute Scale

Analytical chemistry (Washington), 2019-08, Vol.91 (16), p.10713-10722

2019

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Inferring the Nominal Molecular Mass of an Analyte from Its Electron Ionization Mass Spectrum

Analytical chemistry (Washington), 2023-09, Vol.95 (35), p.13132-13139

2023

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Towards Quantitative and Standardized Serological and Neutralization Assays for COVID-19

International journal of molecular sciences, 2021-03, Vol.22 (5), p.2723

2021

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On the challenge of unambiguous identification of fentanyl analogs: Exploring measurement diversity using standard reference mass spectral libraries

Journal of forensic sciences, 2023-09, Vol.68 (5), p.1494-1503

2023

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Establishing CD19 B-cell reference control materials for comparable and quantitative cytometric expression analysis

PloS one, 2021-03, Vol.16 (3), p.e0248118-e0248118

2021

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Analysis and uncertainty quantification of DNA fluorescence melt data: Applications of affine transformations

Analytical biochemistry, 2020-10, Vol.607, p.113773-113773, Article 113773

2020

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Graph convolutional neural network applied to the prediction of normal boiling point

Journal of molecular graphics & modelling, 2022-05, Vol.112, p.108149-108149, Article 108149

2022

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Minding the margins: Evaluating the impact of COVID-19 among Latinx and Black communities with optimal qualitative serological assessment tools

PloS one, 2024-07, Vol.19 (7), p.e0307568

2024

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Optimal decision theory for diagnostic testing: Minimizing indeterminate classes with applications to saliva-based SARS-CoV-2 antibody assays

Mathematical biosciences, 2022-09, Vol.351, p.108858-108858, Article 108858

2022

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Reducing Bias and Quantifying Uncertainty in Fluorescence Produced by PCR

Bulletin of mathematical biology, 2023-09, Vol.85 (9), p.83-83, Article 83

2023

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Monoclonal Antibodies as SARS-CoV-2 Serology Standards: Experimental Validation and Broader Implications for Correlates of Protection

International journal of molecular sciences, 2023-11, Vol.24 (21), p.15705

2023

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Modeling in higher dimensions to improve diagnostic testing accuracy: Theory and examples for multiplex saliva-based SARS-CoV-2 antibody assays

Prevalence estimation and optimal classification methods to account for time dependence in antibody levels

Combining Fragment-Ion and Neutral-Loss Matching during Mass Spectral Library Searching: A New General Purpose Algorithm Applicable to Illicit Drug Identification

Spatially-dependent model for rods and cones in the retina

Predicting Kováts Retention Indices Using Graph Neural Networks

Incorporating measurement variability when comparing sets of high-resolution mass spectra

Serial flow cytometry in an inertial focusing optofluidic microchip for direct assessment of measurement variations

Reproducibility in cytometry: Signals analysis and its connection to uncertainty quantification

Binding, brightness, or noise? Extracting temperature-dependent properties of dye bound to DNA

Classification under uncertainty: data analysis for diagnostic antibody testing

Failure Mechanisms in DNA Self-Assembly: Barriers to Single-Fold Yield

Optimal classification and generalized prevalence estimates for diagnostic settings with more than two classes

Optofluidic flow meter for sub-nanoliter per minute flow measurements

Foundations of modeling in cryobiology—II: Heat and mass transport in bulk and at cell membrane and ice-liquid interfaces

Dynamic Measurement of Nanoflows: Realization of an Optofluidic Flow Meter to the Nanoliter-per-Minute Scale

Inferring the Nominal Molecular Mass of an Analyte from Its Electron Ionization Mass Spectrum

Towards Quantitative and Standardized Serological and Neutralization Assays for COVID-19

On the challenge of unambiguous identification of fentanyl analogs: Exploring measurement diversity using standard reference mass spectral libraries

Establishing CD19 B-cell reference control materials for comparable and quantitative cytometric expression analysis

Analysis and uncertainty quantification of DNA fluorescence melt data: Applications of affine transformations

Graph convolutional neural network applied to the prediction of normal boiling point

Minding the margins: Evaluating the impact of COVID-19 among Latinx and Black communities with optimal qualitative serological assessment tools

Optimal decision theory for diagnostic testing: Minimizing indeterminate classes with applications to saliva-based SARS-CoV-2 antibody assays

Reducing Bias and Quantifying Uncertainty in Fluorescence Produced by PCR

Monoclonal Antibodies as SARS-CoV-2 Serology Standards: Experimental Validation and Broader Implications for Correlates of Protection

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