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High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2

Emerging infectious diseases, 2020-07, Vol.26 (7), p.1470-1477

2020

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Mechanistic Modeling of SARS‐CoV‐2 and Other Infectious Diseases and the Effects of Therapeutics

Clinical pharmacology and therapeutics, 2021-04, Vol.109 (4), p.829-840

2021

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Estimating the strength of selection for new SARS-CoV-2 variants

Nature communications, 2021-12, Vol.12 (1), p.7239-7239, Article 7239

2021

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Swift and extensive Omicron outbreak in China after sudden exit from 'zero-COVID' policy

Nature communications, 2023-07, Vol.14 (1), p.3888-10, Article 3888

2023

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Principles of Effective and Robust Innate Immune Response to Viral Infections: A Multiplex Network Analysis

Frontiers in immunology, 2019-07, Vol.10, p.1736-1736

2019

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Longitudinal Assessment of Diagnostic Test Performance Over the Course of Acute SARS-CoV-2 Infection

The Journal of infectious diseases, 2021-09, Vol.224 (6), p.976-982

2021

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A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2

PLoS biology, 2021-03, Vol.19 (3), p.e3001128-e3001128

2021

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A deep learning approach to real-time HIV outbreak detection using genetic data

PLoS computational biology, 2022-10, Vol.18 (10), p.e1010598-e1010598

2022

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Transcriptional Reprogramming during Effector-to-Memory Transition Renders CD4+ T Cells Permissive for Latent HIV-1 Infection

Immunity (Cambridge, Mass.), 2017-10, Vol.47 (4), p.766-775.e3

2017

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Timing of Antiviral Treatment Initiation is Critical to Reduce SARS‐CoV‐2 Viral Load

CPT: pharmacometrics and systems pharmacology, 2020-09, Vol.9 (9), p.509-514

2020

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Change in global transmission rates of COVID-19 through May 6 2020

PloS one, 2020-08, Vol.15 (8), p.e0236776-e0236776

2020

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Using mixture density networks to emulate a stochastic within-host model of Francisella tularensis infection

PLoS computational biology, 2023-12, Vol.19 (12), p.e1011266-e1011266

2023

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A simple model of COVID-19 explains disease severity and the effect of treatments

Scientific reports, 2022-08, Vol.12 (1), p.14210-14210, Article 14210

2022

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Single cell heterogeneity in influenza A virus gene expression shapes the innate antiviral response to infection

PLoS pathogens, 2020-07, Vol.16 (7), p.e1008671-e1008671

2020

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How robust are estimates of key parameters in standard viral dynamic models?

PLoS computational biology, 2024-04, Vol.20 (4), p.e1011437-e1011437

2024

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Causes and Consequences of Spatial Within-Host Viral Spread

Viruses, 2018-11, Vol.10 (11), p.627

2018

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Influenza A viral burst size from thousands of infected single cells using droplet quantitative PCR (dqPCR)

PLoS pathogens, 2024-07, Vol.20 (7), p.e1012257

2024

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Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion

PLoS pathogens, 2024-07, Vol.20 (7), p.e1012236

2024

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Assessing the impact of human mobility to predict regional excess death in Ecuador

Scientific reports, 2022-01, Vol.12 (1), p.370-370, Article 370

2022

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Stoichiometry for entry and binding properties of the Env protein of R5 T cell-tropic HIV-1 and its evolutionary variant of macrophage-tropic HIV-1

mBio, 2024-04, Vol.15 (4), p.e0032124

2024

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Multi‐species outbreak of SARS‐CoV‐2 Delta variant in a zoological institution, with the detection in two new families of carnivores

Transboundary and emerging diseases, 2022-09, Vol.69 (5), p.e3060-e3075

2022

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Modeling the Effects of Vorinostat In Vivo Reveals both Transient and Delayed HIV Transcriptional Activation and Minimal Killing of Latently Infected Cells

PLoS pathogens, 2015-10, Vol.11 (10), p.e1005237

2015

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Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody

PLoS pathogens, 2024-04, Vol.20 (4), p.e1011680

2024

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An integrative model of ion regulation in yeast

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002879

2013

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Superinfection and cure of infected cells as mechanisms for hepatitis C virus adaptation and persistence

Proceedings of the National Academy of Sciences - PNAS, 2018-07, Vol.115 (30), p.E7139-E7148

2018

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High Contagiousness and Rapid Spread of Severe Acute Respiratory Syndrome Coronavirus 2

Mechanistic Modeling of SARS‐CoV‐2 and Other Infectious Diseases and the Effects of Therapeutics

Estimating the strength of selection for new SARS-CoV-2 variants

Swift and extensive Omicron outbreak in China after sudden exit from 'zero-COVID' policy

Principles of Effective and Robust Innate Immune Response to Viral Infections: A Multiplex Network Analysis

Longitudinal Assessment of Diagnostic Test Performance Over the Course of Acute SARS-CoV-2 Infection

A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2

A deep learning approach to real-time HIV outbreak detection using genetic data

Transcriptional Reprogramming during Effector-to-Memory Transition Renders CD4+ T Cells Permissive for Latent HIV-1 Infection

Timing of Antiviral Treatment Initiation is Critical to Reduce SARS‐CoV‐2 Viral Load

Change in global transmission rates of COVID-19 through May 6 2020

Using mixture density networks to emulate a stochastic within-host model of Francisella tularensis infection

A simple model of COVID-19 explains disease severity and the effect of treatments

Single cell heterogeneity in influenza A virus gene expression shapes the innate antiviral response to infection

How robust are estimates of key parameters in standard viral dynamic models?

Causes and Consequences of Spatial Within-Host Viral Spread

Influenza A viral burst size from thousands of infected single cells using droplet quantitative PCR (dqPCR)

Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion

Assessing the impact of human mobility to predict regional excess death in Ecuador

Stoichiometry for entry and binding properties of the Env protein of R5 T cell-tropic HIV-1 and its evolutionary variant of macrophage-tropic HIV-1

Multi‐species outbreak of SARS‐CoV‐2 Delta variant in a zoological institution, with the detection in two new families of carnivores

Modeling the Effects of Vorinostat In Vivo Reveals both Transient and Delayed HIV Transcriptional Activation and Minimal Killing of Latently Infected Cells

Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody

An integrative model of ion regulation in yeast

Superinfection and cure of infected cells as mechanisms for hepatitis C virus adaptation and persistence

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