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Structural biology of bacterial RNA polymerase

Biomolecules, 2015-05, Vol.5 (2), p.848-864

Murakami, Katsuhiko S

2015

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Recent functional insights into the role of (p)ppGpp in bacterial physiology

Nature reviews. Microbiology, 2015-05, Vol.13 (5), p.298-309

2015

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Differential regulation by ppGpp versus pppGpp in Escherichia coli

Nucleic acids research, 2013-07, Vol.41 (12), p.6175-6189

2013

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Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase

Nucleic acids research, 2020-02, Vol.48 (4), p.2144-2155

2020

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Identification of SARS-CoV-2 inhibitors targeting Mpro and PLpro using in-cell-protease assay

Communications biology, 2022-02, Vol.5 (1), p.169-169, Article 169

2022

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Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli

The Journal of biological chemistry, 2021-12, Vol.297 (6), p.101404-101404, Article 101404

2021

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Structural basis of ribosomal RNA transcription regulation

Nature communications, 2021-01, Vol.12 (1), p.528-528, Article 528

2021

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Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity

Nature communications, 2022-08, Vol.13 (1), p.4624-4624, Article 4624

2022

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Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase

Proceedings of the National Academy of Sciences - PNAS, 2023-02, Vol.120 (7), p.e2218516120-e2218516120

2023

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Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA

Molecular cell, 2018-03, Vol.69 (5), p.828-839.e5

2018

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NusG Is a Sequence-specific RNA Polymerase Pause Factor That Binds to the Non-template DNA within the Paused Transcription Bubble

The Journal of biological chemistry, 2016-03, Vol.291 (10), p.5299-5308

2016

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Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme

The Journal of biological chemistry, 2014-08, Vol.289 (35), p.24549-24559

2014

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SARS-CoV-2 polyprotein substrate regulates the stepwise Mpro cleavage reaction

The Journal of biological chemistry, 2023-05, Vol.299 (5), p.104697-104697, Article 104697

2023

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Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis

Molecular microbiology, 2017-03, Vol.103 (6), p.1034-1045

2017

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Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II

The Journal of biological chemistry, 2018-08, Vol.293 (35), p.13616-13625

2018

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The X-ray crystal structure of RNA polymerase from Archaea

Nature, 2008-02, Vol.451 (7180), p.851-854

2008

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Molecular basis of microhomology-mediated end-joining by purified full-length Polθ

Nature communications, 2019-09, Vol.10 (1), p.4423-16, Article 4423

2019

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Biomarker discovery by integrated joint non-negative matrix factorization and pathway signature analyses

Scientific reports, 2018-06, Vol.8 (1), p.9743-10, Article 9743

2018

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Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA

Nucleic acids research, 2018-11, Vol.46 (21), p.11477-11487

2018

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Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase

Proceedings of the National Academy of Sciences - PNAS, 2024-02, Vol.121 (8), p.e2311480121

2024

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Direct binding of TFEα opens DNA binding cleft of RNA polymerase

Nature communications, 2020-11, Vol.11 (1), p.6123-6123, Article 6123

2020

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Tectonic and geological setting influence hot spring microbiology

Environmental microbiology, 2023-11, Vol.25 (11), p.2481-2497

2023

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Author Correction: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity

Nature communications, 2022-08, Vol.13 (1), p.4839-4839, Article 4839

2022

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RNA polymerase and transcription elongation factor Spt4/5 complex structure

Proceedings of the National Academy of Sciences - PNAS, 2011-01, Vol.108 (2), p.546-550

2011

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Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography

The Journal of biological chemistry, 2013-02, Vol.288 (5), p.3305-3311

2013

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Structural biology of bacterial RNA polymerase

Recent functional insights into the role of (p)ppGpp in bacterial physiology

Differential regulation by ppGpp versus pppGpp in Escherichia coli

Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase

Identification of SARS-CoV-2 inhibitors targeting Mpro and PLpro using in-cell-protease assay

Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli

Structural basis of ribosomal RNA transcription regulation

Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity

Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase

Allosteric Effector ppGpp Potentiates the Inhibition of Transcript Initiation by DksA

NusG Is a Sequence-specific RNA Polymerase Pause Factor That Binds to the Non-template DNA within the Paused Transcription Bubble

Structural Basis of Transcription Initiation by Bacterial RNA Polymerase Holoenzyme

SARS-CoV-2 polyprotein substrate regulates the stepwise Mpro cleavage reaction

Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis

Minimalism and functionality: Structural lessons from the heterodimeric N4 bacteriophage RNA polymerase II

The X-ray crystal structure of RNA polymerase from Archaea

Molecular basis of microhomology-mediated end-joining by purified full-length Polθ

Biomarker discovery by integrated joint non-negative matrix factorization and pathway signature analyses

Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA

Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase

Direct binding of TFEα opens DNA binding cleft of RNA polymerase

Tectonic and geological setting influence hot spring microbiology

Author Correction: Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity

RNA polymerase and transcription elongation factor Spt4/5 complex structure

Watching the Bacteriophage N4 RNA Polymerase Transcription by Time-dependent Soak-trigger-freeze X-ray Crystallography

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