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A formal perturbation equation between genotype and phenotype determines the Evolutionary Action of protein-coding variations on fitness

Genome research, 2014-12, Vol.24 (12), p.2050

2014

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Deleterious Effect of RAS and Evolutionary High-risk TP53 Double Mutation in Colorectal Liver Metastases

Annals of surgery, 2019-05, Vol.269 (5), p.917

2019

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EPIMUTESTR: a nearest neighbor machine learning approach to predict cancer driver genes from the evolutionary action of coding variants

Nucleic acids research, 2022-07, Vol.50 (12), p.e70

2022

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Single nucleotide variations: Biological impact and theoretical interpretation

Protein science, 2014-12, Vol.23 (12), p.1650-1666

2014

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Functional variants identify sex-specific genes and pathways in Alzheimer's Disease

Nature communications, 2023-05, Vol.14 (1), p.2765-2765, Article 2765

2023

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Predicting phenotype from genotype: Improving accuracy through more robust experimental and computational modeling

Human mutation, 2017-05, Vol.38 (5), p.569-580

2017

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Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli

Nature communications, 2022-06, Vol.13 (1), p.3189-3189, Article 3189

2022

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Evolutionary Action Score of TP53 Coding Variants Is Predictive of Platinum Response in Head and Neck Cancer Patients

Cancer research (Chicago, Ill.), 2015-04, Vol.75 (7), p.1205-1215

2015

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Specific TP53 Mutants Overrepresented in Ovarian Cancer Impact CNV, TP53 Activity, Responses to Nutlin-3a, and Cell Survival

Neoplasia (New York, N.Y.), 2015-10, Vol.17 (10), p.789-803

2015

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Codon-level co-occurrences of germline variants and somatic mutations in cancer are rare but often lead to incorrect variant annotation and underestimated impact prediction

PloS one, 2017-03, Vol.12 (3), p.e0174766-e0174766

2017

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CAGI5: Objective performance assessments of predictions based on the Evolutionary Action equation

Human mutation, 2019-09, Vol.40 (9), p.1436-1454

2019

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Separation of recombination and SOS response in Escherichia coli RecA suggests LexA interaction sites

PLoS genetics, 2011-09, Vol.7 (9), p.e1002244

2011

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Evolutionary action score identifies a subset of TP53 mutated myelodysplastic syndrome with favorable prognosis

Blood cancer journal (New York), 2021-03, Vol.11 (3), p.52-52, Article 52

2021

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Mutational Landscape of the BAP1 Locus Reveals an Intrinsic Control to Regulate the miRNA Network and the Binding of Protein Complexes in Uveal Melanoma

Cancers, 2019-10, Vol.11 (10), p.1600

2019

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Objective assessment of the evolutionary action equation for the fitness effect of missense mutations across CAGI‐blinded contests

Human mutation, 2017-09, Vol.38 (9), p.1072-1084

2017

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Molecular defects in human carbamoy phosphate synthetase I: mutational spectrum, diagnostic and protein structure considerations

Human mutation, 2011-06, Vol.32 (6), p.579-589

2011

Volltextzugriff (PDF)

Real world predictors of response and 24-month survival in high-grade TP53-mutated myeloid neoplasms

Blood cancer journal (New York), 2024-06, Vol.14 (1), p.99-11

2024

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Structure and evolutionary trace-assisted screening of a residue swapping the substrate ambiguity and chiral specificity in an esterase

Computational and structural biotechnology journal, 2021-01, Vol.19, p.2307-2317

2021

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PPAR-Responsive Elements Enriched with Alu Repeats May Contribute to Distinctive PPARγ–DNMT1 Interactions in the Genome

Cancers, 2021-08, Vol.13 (16), p.3993

2021

Volltextzugriff (PDF)

Decoding Cancer Variants of Unknown Significance for Helicase-Nuclease-RPA Complexes Orchestrating DNA Repair During Transcription and Replication

Frontiers in molecular biosciences, 2021-12, Vol.8, p.791792-791792

2021

Volltextzugriff (PDF)

Genome interpretation using in silico predictors of variant impact

Human genetics, 2022-10, Vol.141 (10), p.1549-1577

2022

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Negative Feedback in Genetic Circuits Confers Evolutionary Resilience and Capacitance

Cell reports (Cambridge), 2014-06, Vol.7 (6), p.1789-1795

2014

Volltextzugriff (PDF)

ShinyBioHEAT: an interactive shiny app to identify phenotype driver genes in E.coli and B.subtilis

Bioinformatics (Oxford, England), 2023-08, Vol.39 (8)

2023

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A method to delineate de novo missense variants across pathways prioritizes genes linked to autism

Science translational medicine, 2021-05, Vol.13 (594)

2021

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Statistical Physics of Fitness Landscapes Finds Risk Genes Specific to Different AD Genetic Backgrounds

Alzheimer's & dementia, 2023-12, Vol.19 (S12), p.n/a

2023

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A formal perturbation equation between genotype and phenotype determines the Evolutionary Action of protein-coding variations on fitness

Deleterious Effect of RAS and Evolutionary High-risk TP53 Double Mutation in Colorectal Liver Metastases

EPIMUTESTR: a nearest neighbor machine learning approach to predict cancer driver genes from the evolutionary action of coding variants

Single nucleotide variations: Biological impact and theoretical interpretation

Functional variants identify sex-specific genes and pathways in Alzheimer's Disease

Predicting phenotype from genotype: Improving accuracy through more robust experimental and computational modeling

Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli

Evolutionary Action Score of TP53 Coding Variants Is Predictive of Platinum Response in Head and Neck Cancer Patients

Specific TP53 Mutants Overrepresented in Ovarian Cancer Impact CNV, TP53 Activity, Responses to Nutlin-3a, and Cell Survival

Codon-level co-occurrences of germline variants and somatic mutations in cancer are rare but often lead to incorrect variant annotation and underestimated impact prediction

CAGI5: Objective performance assessments of predictions based on the Evolutionary Action equation

Separation of recombination and SOS response in Escherichia coli RecA suggests LexA interaction sites

Evolutionary action score identifies a subset of TP53 mutated myelodysplastic syndrome with favorable prognosis

Mutational Landscape of the BAP1 Locus Reveals an Intrinsic Control to Regulate the miRNA Network and the Binding of Protein Complexes in Uveal Melanoma

Objective assessment of the evolutionary action equation for the fitness effect of missense mutations across CAGI‐blinded contests

Molecular defects in human carbamoy phosphate synthetase I: mutational spectrum, diagnostic and protein structure considerations

Real world predictors of response and 24-month survival in high-grade TP53-mutated myeloid neoplasms

Structure and evolutionary trace-assisted screening of a residue swapping the substrate ambiguity and chiral specificity in an esterase

PPAR-Responsive Elements Enriched with Alu Repeats May Contribute to Distinctive PPARγ–DNMT1 Interactions in the Genome

Decoding Cancer Variants of Unknown Significance for Helicase-Nuclease-RPA Complexes Orchestrating DNA Repair During Transcription and Replication

Genome interpretation using in silico predictors of variant impact

Negative Feedback in Genetic Circuits Confers Evolutionary Resilience and Capacitance

ShinyBioHEAT: an interactive shiny app to identify phenotype driver genes in E.coli and B.subtilis

A method to delineate de novo missense variants across pathways prioritizes genes linked to autism

Statistical Physics of Fitness Landscapes Finds Risk Genes Specific to Different AD Genetic Backgrounds

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