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MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1160-1166

2019

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GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

Nucleic acids research, 2015-07, Vol.43 (W1), p.W7

2015

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A simple method to control over-alignment in the MAFFT multiple sequence alignment program

Bioinformatics, 2016-07, Vol.32 (13), p.1933-1942

2016

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Parallelization of the MAFFT multiple sequence alignment program

Bioinformatics, 2010-08, Vol.26 (15), p.1899-1900

2010

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Parallelization of MAFFT for large-scale multiple sequence alignments

Bioinformatics, 2018-07, Vol.34 (14), p.2490-2492

2018

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Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

BMC bioinformatics, 2008-04, Vol.9 (1), p.212-212, Article 212

2008

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Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees

Bioinformatics (Oxford, England), 2016-11, Vol.32 (21), p.3246-3251

2016

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ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone

BMC biology, 2021-09, Vol.19 (1), p.217-217, Article 217

2021

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Long-read sequencing identifies the pathogenic nucleotide repeat expansion in RFC1 in a Japanese case of CANVAS

Journal of human genetics, 2020-05, Vol.65 (5), p.475-480

2020

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Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote

Journal of molecular evolution, 2022-02, Vol.90 (1), p.73-94

2022

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Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer-Giedion syndrome and Cornelia de Lange syndrome-4

Journal of human genetics, 2020-08, Vol.65 (8), p.667-674

2020

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Emerging SARS-CoV-2 variants follow a historical pattern recorded in outgroups infecting non-human hosts

Communications biology, 2021-09, Vol.4 (1), p.1134-1134, Article 1134

2021

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A pipeline for complete characterization of complex germline rearrangements from long DNA reads

Genome medicine, 2020-07, Vol.12 (1), p.67-67, Article 67

2020

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Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota

Nature cell biology, 2023-06, Vol.25 (6), p.865

2023

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PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

Bioinformatics, 2007-02, Vol.23 (3), p.372-374

2007

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Flexible, Functional, and Familiar: Characteristics of SARS-CoV-2 Spike Protein Evolution

Frontiers in microbiology, 2020-09, Vol.11, p.2112-2112

2020

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The evolution of structural genomics

Biophysical reviews, 2022-12, Vol.14 (6), p.1247-1253

2022

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MAFFT multiple sequence alignment software version 7: improvements in performance and usability

Molecular biology and evolution, 2013-04, Vol.30 (4), p.772-780

2013

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Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins

Molecular biology and evolution, 2005-04, Vol.22 (4), p.810-813

2005

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Recent developments in the MAFFT multiple sequence alignment program

Briefings in bioinformatics, 2008-07, Vol.9 (4), p.286-298

2008

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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Molecular biology and evolution, 2013-04, Vol.30 (4), p.772-780

2013

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Molecular Evolution of Arthropod Color Vision Deduced from Multiple Opsin Genes of Jumping Spiders

Journal of molecular evolution, 2008-02, Vol.66 (2), p.130-137

2008

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Functional lysophosphatidic acid receptors expressed in Oryzias latipes

Gene, 2014-11, Vol.551 (2), p.189-200

2014

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aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity

Nucleic acids research, 2013-07, Vol.41 (Web Server issue), p.W22

2013

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Adding unaligned sequences into an existing alignment using MAFFT and LAST

Bioinformatics, 2012-12, Vol.28 (23), p.3144-3146

2012

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MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

A simple method to control over-alignment in the MAFFT multiple sequence alignment program

Parallelization of the MAFFT multiple sequence alignment program

Parallelization of MAFFT for large-scale multiple sequence alignments

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees

ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone

Long-read sequencing identifies the pathogenic nucleotide repeat expansion in RFC1 in a Japanese case of CANVAS

Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote

Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer-Giedion syndrome and Cornelia de Lange syndrome-4

Emerging SARS-CoV-2 variants follow a historical pattern recorded in outgroups infecting non-human hosts

A pipeline for complete characterization of complex germline rearrangements from long DNA reads

Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

Flexible, Functional, and Familiar: Characteristics of SARS-CoV-2 Spike Protein Evolution

The evolution of structural genomics

MAFFT multiple sequence alignment software version 7: improvements in performance and usability

Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins

Recent developments in the MAFFT multiple sequence alignment program

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Molecular Evolution of Arthropod Color Vision Deduced from Multiple Opsin Genes of Jumping Spiders

Functional lysophosphatidic acid receptors expressed in Oryzias latipes

aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity

Adding unaligned sequences into an existing alignment using MAFFT and LAST

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