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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

PloS one, 2021-01, Vol.16 (1), p.e0245172-e0245172

2021

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Prevalence of Hemolysin Genes and Comparison of ehxA Subtype Patterns in Shiga Toxin-Producing Escherichia coli (STEC) and Non-STEC Strains from Clinical, Food, and Animal Sources

Applied and Environmental Microbiology, 2013-10, Vol.79 (20), p.6301-6311

2013

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The Persistence of Bacterial Pathogens in Surface Water and Its Impact on Global Food Safety

Pathogens (Basel), 2021-10, Vol.10 (11), p.1391

2021

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Interactions of E. coli with algae and aquatic vegetation in natural waters

Water research (Oxford), 2022-02, Vol.209, p.117952, Article 117952

2022

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Characterization of microflora in Latin-style cheeses by next-generation sequencing technology

BMC microbiology, 2012-11, Vol.12 (1), p.254-254

2012

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Evaluation of Liquid- and Fog-Based Application of Sterilox Hypochlorous Acid Solution for Surface Inactivation of Human Norovirus

Applied and Environmental Microbiology, 2007-07, Vol.73 (14), p.4463-4468

2007

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Metagenomic survey of agricultural water using long read sequencing: Considerations for a successful analysis

Frontiers in environmental science, 2022-08, Vol.10

2022

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Plasmids from Shiga Toxin-Producing Escherichia coli Strains with Rare Enterohemolysin Gene (ehxA) Subtypes Reveal Pathogenicity Potential and Display a Novel Evolutionary Path

Applied and environmental microbiology, 2016-11, Vol.82 (21), p.6367-6377

2016

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Identification of Brucella genus and eight Brucella species by Luminex bead-based suspension array

Food microbiology, 2018-04, Vol.70, p.113-119

2018

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Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization

BMC microbiology, 2017-08, Vol.17 (1), p.183-183, Article 183

2017

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Comparison of eight different agars for the recovery of clinically relevant non-O157 Shiga toxin-producing Escherichia coli from baby spinach, cilantro, alfalfa sprouts and raw milk

Food microbiology, 2015-04, Vol.46, p.280-287

2015

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Rapid Identification of Shiga Toxin-Producing Escherichia coli O Serogroups from Fresh Produce and Raw Milk Enrichment Cultures by Luminex Bead-Based Suspension Array

Journal of food protection, 2016-09, Vol.79 (9), p.1623-1629

2016

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Comparison of six commercial DNA extraction kits for detection of Brucella neotomae in Mexican and Central American-style cheese and other milk products

Food microbiology, 2013-05, Vol.34 (1), p.100-105

2013

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Current trends in detecting non-O157 Shiga toxin-producing Escherichia coli in food

Foodborne pathogens and disease, 2013-08, Vol.10 (8), p.665

2013

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Detection of five Shiga toxin-producing Escherichia coli genes with multiplex PCR

Food microbiology, 2014-06, Vol.40, p.31-40

2014

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Rapid O serogroup identification of the ten most clinically relevant STECs by Luminex microbead-based suspension array

Journal of microbiological methods, 2011-10, Vol.87 (1), p.105-110

2011

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Identification of five Shiga toxin-producing Escherichia coli genes by Luminex microbead-based suspension array

Journal of microbiological methods, 2015-04, Vol.111, p.108-110

2015

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Improved PCR-RFLP method for the identification of Escherichia coli enterohemolysin (ehxA) subtypes

Journal of microbiological methods, 2014-05, Vol.100, p.24-26

2014

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Isolation of Shiga Toxin―Producing Escherichia coli from Fresh Produce Using STEC Heart Infusion Washed Blood Agar with Mitomycin-C

Journal of food protection, 2012-11, Vol.75 (11), p.2028-2030

2012

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Microbial Quality of Bagged Baby Spinach and Romaine Lettuce: Effects of Top versus Bottom Sampling

Journal of food protection, 2012, Vol.75 (1), p.132-136

2012

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Comparison of different sample preparation procedures for the detection and isolation of Escherichia coli O157:H7 and Non-O157 STECs from leafy greens and cilantro

Food microbiology, 2012-12, Vol.32 (2), p.423-426

2012

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Multilaboratory Validation of a Luminex Microbead-Based Suspension Array for the Identification of the 11 Most Clinically Relevant Shiga Toxin-Producing Escherichia coli O Serogroups

Journal of food protection, 2013-05, Vol.76 (5), p.867-870

2013

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North Carolina Hispanic Farmworkers and Intestinal Parasitism: A Pilot Study of Prevalence and Health-Related Practices, and Potential Means of Foodborne Transmission

Journal of food protection, 2010-05, Vol.73 (5), p.985-988

2010

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Genetic profiles of Shiga toxin and intimin genes found in stool broth cultures: a 2-year reference laboratory study

Diagnostic microbiology and infectious disease, 2009-10, Vol.65 (2), p.85-92

2009

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Detection and molecular characterization of swine hepatitis E virus in North Carolina swine herds and their faecal wastes

Journal of water and health, 2009-06, Vol.7 (2), p.344-357

2009

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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

Prevalence of Hemolysin Genes and Comparison of ehxA Subtype Patterns in Shiga Toxin-Producing Escherichia coli (STEC) and Non-STEC Strains from Clinical, Food, and Animal Sources

The Persistence of Bacterial Pathogens in Surface Water and Its Impact on Global Food Safety

Interactions of E. coli with algae and aquatic vegetation in natural waters

Characterization of microflora in Latin-style cheeses by next-generation sequencing technology

Evaluation of Liquid- and Fog-Based Application of Sterilox Hypochlorous Acid Solution for Surface Inactivation of Human Norovirus

Metagenomic survey of agricultural water using long read sequencing: Considerations for a successful analysis

Plasmids from Shiga Toxin-Producing Escherichia coli Strains with Rare Enterohemolysin Gene (ehxA) Subtypes Reveal Pathogenicity Potential and Display a Novel Evolutionary Path

Identification of Brucella genus and eight Brucella species by Luminex bead-based suspension array

Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization

Comparison of eight different agars for the recovery of clinically relevant non-O157 Shiga toxin-producing Escherichia coli from baby spinach, cilantro, alfalfa sprouts and raw milk

Rapid Identification of Shiga Toxin-Producing Escherichia coli O Serogroups from Fresh Produce and Raw Milk Enrichment Cultures by Luminex Bead-Based Suspension Array

Comparison of six commercial DNA extraction kits for detection of Brucella neotomae in Mexican and Central American-style cheese and other milk products

Current trends in detecting non-O157 Shiga toxin-producing Escherichia coli in food

Detection of five Shiga toxin-producing Escherichia coli genes with multiplex PCR

Rapid O serogroup identification of the ten most clinically relevant STECs by Luminex microbead-based suspension array

Identification of five Shiga toxin-producing Escherichia coli genes by Luminex microbead-based suspension array

Improved PCR-RFLP method for the identification of Escherichia coli enterohemolysin (ehxA) subtypes

Isolation of Shiga Toxin―Producing Escherichia coli from Fresh Produce Using STEC Heart Infusion Washed Blood Agar with Mitomycin-C

Microbial Quality of Bagged Baby Spinach and Romaine Lettuce: Effects of Top versus Bottom Sampling

Comparison of different sample preparation procedures for the detection and isolation of Escherichia coli O157:H7 and Non-O157 STECs from leafy greens and cilantro

Multilaboratory Validation of a Luminex Microbead-Based Suspension Array for the Identification of the 11 Most Clinically Relevant Shiga Toxin-Producing Escherichia coli O Serogroups

North Carolina Hispanic Farmworkers and Intestinal Parasitism: A Pilot Study of Prevalence and Health-Related Practices, and Potential Means of Foodborne Transmission

Genetic profiles of Shiga toxin and intimin genes found in stool broth cultures: a 2-year reference laboratory study

Detection and molecular characterization of swine hepatitis E virus in North Carolina swine herds and their faecal wastes

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