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A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

BMC bioinformatics, 2019-06, Vol.20 (Suppl 11), p.275-275, Article 275

2019

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The tandem duplicator phenotype as a distinct genomic configuration in cancer

Proceedings of the National Academy of Sciences - PNAS, 2016-04, Vol.113 (17), p.E2373-E2382

2016

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REST regulates distinct transcriptional networks in embryonic and neural stem cells

PLoS biology, 2008-10, Vol.6 (10), p.e256-e256

2008

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Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

BMC medical genomics, 2019-07, Vol.12 (1), p.92-19, Article 92

2019

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Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology

PLoS genetics, 2008-07, Vol.4 (7), p.e1000121-e1000121

2008

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Adaptive Sentinel Testing in Workplace for COVID-19 Pandemic

Journal of computational biology, 2023-04, Vol.30 (4), p.376

2023

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Bias in the estimation of false discovery rate in microarray studies

Bioinformatics, 2005-10, Vol.21 (20), p.3865-3872

2005

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CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence

EBioMedicine, 2020-11, Vol.61, p.103030-103030, Article 103030

2020

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MultiDCoX: Multi-factor analysis of differential co-expression

BMC bioinformatics, 2017-12, Vol.18 (Suppl 16), p.576-576, Article 576

2017

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Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression

Nature biotechnology, 2006-01, Vol.24 (1), p.73-75

2006

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High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts

Scientific reports, 2018-12, Vol.8 (1), p.17937-16, Article 17937

2018

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Histone H3 lysine 4 monomethylation (H3K4me1) and H3 lysine 9 monomethylation (H3K9me1): Distribution and their association in regulating gene expression under hyperglycaemic/hyperinsulinemic conditions in 3T3 cells

Biochimie, 2012-12, Vol.94 (12), p.2656-2664

2012

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role of post-transcriptional RNA processing and plasmid vector sequences on transient transgene expression in zebrafish

Transgenic research, 2010-04, Vol.19 (2), p.299-304

2010

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Transfer learning‐trained convolutional neural networks identify novel MRI biomarkers of Alzheimer's disease progression

Alzheimer's & dementia : diagnosis, assessment & disease monitoring, 2021, Vol.13 (1), p.e12140-n/a

2021

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A human in vitro model system for investigating genome-wide host responses to SARS coronavirus infection

BMC infectious diseases, 2004-09, Vol.4 (1), p.34-34, Article 34

2004

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Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities

Journal of biomolecular techniques, 2020-07, Vol.31 (2), p.66-73

2020

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Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms

Algorithms for molecular biology, 2010-05, Vol.5 (1), p.23-23, Article 23

2010

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Identifying Driver Genes in Cancer by Triangulating Gene Expression, Gene Location, and Survival Data

Cancer Informatics, 2014-01, Vol.2014 (Suppl. 6), p.35-48

2014

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Identification of cell cycle-regulated genes in fission yeast

Molecular biology of the cell, 2005-03, Vol.16 (3), p.1026-1042

2005

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multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles

Cancer Informatics, 2016-01, Vol.2016 (15), p.103-114

2016

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Systematic Deletion Analysis of Fission Yeast Protein Kinases

Eukaryotic Cell, 2005-04, Vol.4 (4), p.799-813

2005

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Mouse strain specific gene expression differences for illumina microarray expression profiling in embryos

BMC research notes, 2012-05, Vol.5 (1), p.232-232, Article 232

2012

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A Bayesian Framework for Generalized Linear Mixed Modeling Identifies New Candidate Loci for Late-Onset Alzheimer's Disease

Genetics (Austin), 2018-05, Vol.209 (1), p.51-64

2018

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A computational method to aid the design and analysis of single cell RNA-seq experiments for cell type identification

The tandem duplicator phenotype as a distinct genomic configuration in cancer

REST regulates distinct transcriptional networks in embryonic and neural stem cells

Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines

Zebrafish whole-adult-organism chemogenomics for large-scale predictive and discovery chemical biology

Adaptive Sentinel Testing in Workplace for COVID-19 Pandemic

Bias in the estimation of false discovery rate in microarray studies

CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence

MultiDCoX: Multi-factor analysis of differential co-expression

Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression

High-resolution deconstruction of evolution induced by chemotherapy treatments in breast cancer xenografts

Histone H3 lysine 4 monomethylation (H3K4me1) and H3 lysine 9 monomethylation (H3K9me1): Distribution and their association in regulating gene expression under hyperglycaemic/hyperinsulinemic conditions in 3T3 cells

role of post-transcriptional RNA processing and plasmid vector sequences on transient transgene expression in zebrafish

Transfer learning‐trained convolutional neural networks identify novel MRI biomarkers of Alzheimer's disease progression

A human in vitro model system for investigating genome-wide host responses to SARS coronavirus infection

Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities

Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms

Identifying Driver Genes in Cancer by Triangulating Gene Expression, Gene Location, and Survival Data

Identification of cell cycle-regulated genes in fission yeast

multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles

An oestrogen-receptor-alpha-bound human chromatin interactome

Systematic Deletion Analysis of Fission Yeast Protein Kinases

A Genomically and Clinically Annotated Patient-Derived Xenograft Resource for Preclinical Research in Non-Small Cell Lung Cancer

Mouse strain specific gene expression differences for illumina microarray expression profiling in embryos

A Bayesian Framework for Generalized Linear Mixed Modeling Identifies New Candidate Loci for Late-Onset Alzheimer's Disease

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