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Multiscale Spatial Organization of RNA Polymerase in Escherichia coli

Biophysical journal, 2013-07, Vol.105 (1), p.172-181

2013

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Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms

Journal of molecular biology, 2019-09, Vol.431 (20), p.3947-3959

2019

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DAOSTORM: an algorithm for high- density super-resolution microscopy

Nature methods, 2011-04, Vol.8 (4), p.279

2011

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Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

Proceedings of the National Academy of Sciences - PNAS, 2015-08, Vol.112 (32), p.E4390-E4399

2015

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Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins

Molecular cell, 2021-04, Vol.81 (7), p.1499-1514.e6

2021

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RNA Polymerase Pausing during Initial Transcription

Molecular cell, 2016-09, Vol.63 (6), p.939-950

2016

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Long-Lived Intracellular Single-Molecule Fluorescence Using Electroporated Molecules

Biophysical journal, 2013-12, Vol.105 (11), p.2439-2450

2013

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Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli

Nature communications, 2016-08, Vol.7 (1), p.12568-12568, Article 12568

2016

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Single-molecule DNA repair in live bacteria

Proceedings of the National Academy of Sciences - PNAS, 2013-05, Vol.110 (20), p.8063-8068

2013

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RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding

Nucleic acids research, 2021-03, Vol.49 (5), p.2790

2021

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The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF

Cell reports (Cambridge), 2015-12, Vol.13 (11), p.2587-2596

2015

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Identifying Molecular Dynamics in Single-Molecule FRET Experiments with Burst Variance Analysis

Biophysical journal, 2011-03, Vol.100 (6), p.1568-1577

2011

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Characterization of Dark Quencher Chromophores as Nonfluorescent Acceptors for Single-Molecule FRET

Biophysical journal, 2012-06, Vol.102 (11), p.2658-2668

2012

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The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp

Nucleic acids research, 2018-08, Vol.46 (14), p.7284

2018

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Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3)

Molecular cell, 2018-04, Vol.70 (1), p.60-71.e15

2018

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High-throughput super-resolution analysis of influenza virus pleomorphism reveals insights into viral spatial organization

PLoS pathogens, 2023-06, Vol.19 (6), p.e1011484-e1011484

2023

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Initial Transcription by RNA Polymerase Proceeds Through a DNA-Scrunching Mechanism

Science (American Association for the Advancement of Science), 2006-11, Vol.314 (5802), p.1144-1147

2006

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Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase

Nucleic acids research, 2019-11, Vol.47 (20), p.10788

2019

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Viral detection and identification in 20 min by rapid single-particle fluorescence in-situ hybridization of viral RNA

Scientific reports, 2021-10, Vol.11 (1), p.19579-19579, Article 19579

2021

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Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria

Nature communications, 2018-04, Vol.9 (1), p.1478-12, Article 1478

2018

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Conformational transitions in DNA polymerase I revealed by single-molecule FRET

Proceedings of the National Academy of Sciences - PNAS, 2010-01, Vol.107 (2), p.715-720

2010

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Tracking Low-Copy Transcription Factors in Living Bacteria: The Case of the lac Repressor

Biophysical journal, 2017-04, Vol.112 (7), p.1316-1327

2017

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High-throughput nitrogen-vacancy center imaging for nanodiamond photophysical characterization and pH nanosensing

Nanoscale, 2020-11, Vol.12 (42), p.21821-21831

2020

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Defining the Limits of Single-Molecule FRET Resolution in TIRF Microscopy

Biophysical journal, 2010-11, Vol.99 (9), p.3102-3111

2010

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Single-molecule FRET reveals a corkscrew RNA structure for the polymerase-bound influenza virus promoter

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (32), p.11583-11583

2014

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Multiscale Spatial Organization of RNA Polymerase in Escherichia coli

Recent Advances in Understanding σ70-Dependent Transcription Initiation Mechanisms

DAOSTORM: an algorithm for high- density super-resolution microscopy

Live-cell superresolution microscopy reveals the organization of RNA polymerase in the bacterial nucleoid

Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins

RNA Polymerase Pausing during Initial Transcription

Long-Lived Intracellular Single-Molecule Fluorescence Using Electroporated Molecules

Single-molecule imaging of UvrA and UvrB recruitment to DNA lesions in living Escherichia coli

Single-molecule DNA repair in live bacteria

RNA polymerase clamp conformational dynamics: long-lived states and modulation by crowding, cations, and nonspecific DNA binding

The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF

Identifying Molecular Dynamics in Single-Molecule FRET Experiments with Burst Variance Analysis

Characterization of Dark Quencher Chromophores as Nonfluorescent Acceptors for Single-Molecule FRET

The RNA polymerase clamp interconverts dynamically among three states and is stabilized in a partly closed state by ppGpp

Structural Basis of Transcription Inhibition by Fidaxomicin (Lipiarmycin A3)

High-throughput super-resolution analysis of influenza virus pleomorphism reveals insights into viral spatial organization

Initial Transcription by RNA Polymerase Proceeds Through a DNA-Scrunching Mechanism

Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase

Viral detection and identification in 20 min by rapid single-particle fluorescence in-situ hybridization of viral RNA

Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria

Conformational transitions in DNA polymerase I revealed by single-molecule FRET

Tracking Low-Copy Transcription Factors in Living Bacteria: The Case of the lac Repressor

High-throughput nitrogen-vacancy center imaging for nanodiamond photophysical characterization and pH nanosensing

Defining the Limits of Single-Molecule FRET Resolution in TIRF Microscopy

Single-molecule FRET reveals a corkscrew RNA structure for the polymerase-bound influenza virus promoter

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