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Chapter 4: Protein interactions and disease

PLoS computational biology, 2012-12, Vol.8 (12), p.e1002819-e1002819

2012

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Putting benchmarks in their rightful place: The heart of computational biology

PLoS computational biology, 2018-11, Vol.14 (11), p.e1006494-e1006494

2018

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Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples

PLoS computational biology, 2017-04, Vol.13 (4), p.e1005428-e1005428

2017

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Retraction notice to <Recruitment of Tiam1 to Semaphorin 4D activates Rac and enhances proliferation, invasion and metastasis in oral squamous cell carcinoma> <[Neoplasia 19 (2016) 65-74]>

Neoplasia (New York, N.Y.), 2021-08, Vol.23 (8), p.835-835

2021

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Recruitment of Tiam1 to Semaphorin 4D Activates Rac and Enhances Proliferation, Invasion, and Metastasis in Oral Squamous Cell Carcinoma

Neoplasia (New York, N.Y.), 2017-02, Vol.19 (2), p.65-74

2017

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Pathway networks generated from human disease phenome

BMC medical genomics, 2018-09, Vol.11 (Suppl 3), p.75-75, Article 75

2018

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The Human Extracellular Matrix Diseasome Reveals Genotype-Phenotype Associations with Clinical Implications for Age-Related Diseases

Biomedicines, 2023-04, Vol.11 (4), p.1212

2023

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Gain and loss of phosphorylation sites in human cancer

Bioinformatics, 2008-08, Vol.24 (16), p.i241-i247

2008

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Towards Precision Medicine: Advances in Computational Approaches for the Analysis of Human Variants

Journal of molecular biology, 2013-11, Vol.425 (21), p.4047-4063

2013

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Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing

Database : the journal of biological databases and curation, 2014, Vol.2014

2014

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Advances in translational bioinformatics: computational approaches for the hunting of disease genes

Briefings in bioinformatics, 2010-01, Vol.11 (1), p.96-110

Kann, Maricel G.

2010

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Protein interactions and disease: computational approaches to uncover the etiology of diseases

Briefings in bioinformatics, 2007-09, Vol.8 (5), p.333-346

Kann, Maricel G.

2007

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Predicting protein domain interactions from coevolution of conserved regions

Proteins, structure, function, and bioinformatics, 2007-06, Vol.67 (4), p.811-820

2007

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Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

Bioinformatics, 2011-02, Vol.27 (3), p.408-415

2011

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BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

PLoS computational biology, 2020-04, Vol.16 (4), p.e1007617

2020

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Bioinformatics for personal genome interpretation

Briefings in bioinformatics, 2012-07, Vol.13 (4), p.495-512

2012

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Regulatory Single-Nucleotide Variant Predictor Increases Predictive Performance of Functional Regulatory Variants

Human mutation, 2016-11, Vol.37 (11), p.1137-1143

2016

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Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome

PLoS computational biology, 2019-06, Vol.15 (6), p.e1007112

2019

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Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006832

2019

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Domain landscapes of somatic mutations in cancer

BMC genomics, 2012-06, Vol.13 Suppl 4 (Suppl 4), p.S9-S9, Article S9

2012

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Histone structure and nucleosome stability

Expert review of proteomics, 2005-10, Vol.2 (5), p.719-729

2005

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Small-angle X-ray scattering method to characterize molecular interactions: Proof of concept

Scientific reports, 2015-07, Vol.5 (1), p.12085, Article 12085

2015

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Passenger mutations accurately classify human tumors

PLoS computational biology, 2019-04, Vol.15 (4), p.e1006953

2019

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Mac-1 Regulates IL-13 Activity in Macrophages by Directly Interacting with IL-13Rα1

The Journal of biological chemistry, 2015-08, Vol.290 (35), p.21642-21651

2015

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Constructing benchmark test sets for biological sequence analysis using independent set algorithms

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009492-e1009492

2022

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Chapter 4: Protein interactions and disease

Putting benchmarks in their rightful place: The heart of computational biology

Oncodomains: A protein domain-centric framework for analyzing rare variants in tumor samples

Retraction notice to <Recruitment of Tiam1 to Semaphorin 4D activates Rac and enhances proliferation, invasion and metastasis in oral squamous cell carcinoma> <[Neoplasia 19 (2016) 65-74]>

Recruitment of Tiam1 to Semaphorin 4D Activates Rac and Enhances Proliferation, Invasion, and Metastasis in Oral Squamous Cell Carcinoma

Pathway networks generated from human disease phenome

The Human Extracellular Matrix Diseasome Reveals Genotype-Phenotype Associations with Clinical Implications for Age-Related Diseases

Gain and loss of phosphorylation sites in human cancer

Towards Precision Medicine: Advances in Computational Approaches for the Analysis of Human Variants

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing

Advances in translational bioinformatics: computational approaches for the hunting of disease genes

Protein interactions and disease: computational approaches to uncover the etiology of diseases

Predicting protein domain interactions from coevolution of conserved regions

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

Bioinformatics for personal genome interpretation

Regulatory Single-Nucleotide Variant Predictor Increases Predictive Performance of Functional Regulatory Variants

Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome

Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome

Domain landscapes of somatic mutations in cancer

Histone structure and nucleosome stability

Small-angle X-ray scattering method to characterize molecular interactions: Proof of concept

Passenger mutations accurately classify human tumors

Mac-1 Regulates IL-13 Activity in Macrophages by Directly Interacting with IL-13Rα1

Constructing benchmark test sets for biological sequence analysis using independent set algorithms

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