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Rapid antibiotic susceptibility testing and species identification for mixed samples

Nature communications, 2022-10, Vol.13 (1), p.6215-6215, Article 6215

2022

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Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy

PLoS computational biology, 2023-11, Vol.19 (11), p.e1011181-e1011181

2023

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Effects of σ factor competition are promoter initiation kinetics dependent

Biochimica et biophysica acta, 2016-10, Vol.1859 (10), p.1281-1288

2016

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Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression

Biochimica et biophysica acta. Gene regulatory mechanisms, 2019-02, Vol.1862 (2), p.119-128

2019

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A library of reporters of the global regulators of gene expression in Escherichia coli

mSystems, 2024-04, Vol.9 (6), p.e0006524

2024

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Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements

PLoS computational biology, 2016-10, Vol.12 (10), p.e1005174-e1005174

2016

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Analytical kinetic model of native tandem promoters in E. coli

PLoS computational biology, 2022-01, Vol.18 (1), p.e1009824-e1009824

2022

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Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry

Journal of microbiological methods, 2019-11, Vol.166, p.105745-105745, Article 105745

2019

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Chromosome and plasmid-borne P LacO3O1 promoters differ in sensitivity to critically low temperatures

Scientific reports, 2019-12, Vol.9 (1), p.4486

2019

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Chromosome and plasmid-borne PLacO3O1 promoters differ in sensitivity to critically low temperatures

Scientific reports, 2019-03, Vol.9 (1), Article 4486

2019

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Novel TCAP mutation c.32C>A causing limb girdle muscular dystrophy 2G

PloS one, 2014-07, Vol.9 (7), p.e102763-e102763

2014

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Sequence-dependent model of genes with dual s factor preference

Biochimica et biophysica acta. Gene regulatory mechanisms, 2022-04, Vol.1865 (3)

2022

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Rate-limiting steps in transcription dictate sensitivity to variability in cellular components

Scientific reports, 2017-09, Vol.7 (1), p.10588-10, Article 10588

2017

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Sequence-dependent model of genes with dual σ factor preference

Biochimica et biophysica acta. Gene regulatory mechanisms, 2022-04, Vol.1865 (3), p.194812-194812, Article 194812

2022

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The transcription factor network of E. coli steers global responses to shifts in RNAP concentration

Nucleic acids research, 2022-07, Vol.50 (12), p.6801

2022

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Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup

Biochimica et biophysica acta. Gene regulatory mechanisms, 2020-05, Vol.1863 (5), p.194515-194515, Article 194515

2020

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Dissecting the stochastic transcription initiation process in live Escherichia coli

DNA research, 2016-06, Vol.23 (3), p.203-214

2016

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Efficiency and Robustness of Processes Driven by Nucleoid Exclusion in Escherichia coli

Physical Microbiology, 2020, Vol.1267, p.59-80

2020

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Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli

Computational Methods in Systems Biology, p.3-20

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Novel TCAP Mutation c.32CA Causing Limb Girdle Muscular Dystrophy 2G

PloS one, 2014-07, Vol.9 (7)

2014

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Rapid antibiotic susceptibility testing and species identification for mixed samples

Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy

Effects of σ factor competition are promoter initiation kinetics dependent

Regulation of asymmetries in the kinetics and protein numbers of bacterial gene expression

A library of reporters of the global regulators of gene expression in Escherichia coli

Temperature-Dependent Model of Multi-step Transcription Initiation in Escherichia coli Based on Live Single-Cell Measurements

Analytical kinetic model of native tandem promoters in E. coli

Estimating RNA numbers in single cells by RNA fluorescent tagging and flow cytometry

Chromosome and plasmid-borne P LacO3O1 promoters differ in sensitivity to critically low temperatures

Chromosome and plasmid-borne PLacO3O1 promoters differ in sensitivity to critically low temperatures

Novel TCAP mutation c.32C>A causing limb girdle muscular dystrophy 2G

Sequence-dependent model of genes with dual s factor preference

Rate-limiting steps in transcription dictate sensitivity to variability in cellular components

Sequence-dependent model of genes with dual σ factor preference

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration

Dissecting the in vivo dynamics of transcription locking due to positive supercoiling buildup

Dissecting the stochastic transcription initiation process in live Escherichia coli

Efficiency and Robustness of Processes Driven by Nucleoid Exclusion in Escherichia coli

Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia Coli

Novel TCAP Mutation c.32CA Causing Limb Girdle Muscular Dystrophy 2G

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