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CellProfiler 3.0: Next-generation image processing for biology

PLoS biology, 2018-07, Vol.16 (7), p.e2005970-e2005970

2018

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Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions

Nature communications, 2022-04, Vol.13 (1), p.1799-1799, Article 1799

2022

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Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

Bioinformatics, 2011-04, Vol.27 (8), p.1179-1180

2011

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An open-source solution for advanced imaging flow cytometry data analysis using machine learning

Methods (San Diego, Calif.), 2017-01, Vol.112, p.201-210

2017

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Integrated platform for multiscale molecular imaging and phenotyping of the human brain

Science (American Association for the Advancement of Science), 2024-06, Vol.384 (6701), p.eadh9979

2024

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High- and low-throughput scoring of fat mass and body fat distribution in C. elegans

Methods (San Diego, Calif.), 2014-08, Vol.68 (3), p.492-499

2014

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Scalable Interactive Visualization for Connectomics

Informatics (Basel), 2017-09, Vol.4 (3), p.29

2017

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A call for bioimaging software usability

Nature methods, 2012-06, Vol.9 (7), p.666

2012

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Crowdsourcing the creation of image segmentation algorithms for connectomics

Frontiers in neuroanatomy, 2015-11, Vol.9 (142), p.142-142

2015

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An image analysis toolbox for high-throughput C. elegans assays

Nature methods, 2012-07, Vol.9 (7), p.714

2012

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Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data

Frontiers in neuroscience, 2022-04, Vol.16, p.871228-871228

2022

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Discovery of New Anti-Schistosomal Hits by Integration of QSAR-Based Virtual Screening and High Content Screening

Journal of medicinal chemistry, 2016-08, Vol.59 (15), p.7075-7088

2016

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Pharmacological HIF2α inhibition improves VHL disease-associated phenotypes in zebrafish model

The Journal of clinical investigation, 2015-05, Vol.125 (5), p.1987-1997

2015

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QSAR-Driven Discovery of Novel Chemical Scaffolds Active against Schistosoma mansoni

Journal of chemical information and modeling, 2016-07, Vol.56 (7), p.1357-1372

2016

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Abstract 1578: Small molecule HIF-2a inhibitors down regulate its activity in vivo and ameliorate the vhl zebrafish phenotype

Cancer research (Chicago, Ill.), 2013-04, Vol.73 (8_Supplement), p.1578-1578

2013

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PI-09 PRECLINICAL TESTING OF SMALL MOLECULE HIF2α INHIBITOR IN ZEBRAFISH AND MOUSE MODELS OF VHL-DEFICIENT RENAL CELL CARCINOMA

The Journal of urology, 2015-04, Vol.193 (4), p.e983-e983

2015

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Pharmacological HIF2[alpha] inhibition improves VHL disease-associated phenotypes in zebrafish model.(RESEARCH ARTICLE)

The Journal of clinical investigation, 2015-05, Vol.125 (5), p.1987

2015

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The antidepressant drug paroxetine as a new lead candidate in schistosome drug discovery

MedChemComm, 2016-01, Vol.7 (6), p.1176-1182

2016

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Slide-based laser scanning cytometry

Acta cytologica, 1997, Vol.41 (1), p.123-143

1997

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The antidepressant drug paroxetine as a new lead candidate in schistosome drug discoveryThe authors declare no competing interests

2016-06

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Two Stream Active Query Suggestion for Active Learning in Connectomics

Computer Vision - ECCV 2020, 2020, Vol.12363, p.103-120

2020

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Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets

Computer Vision – ECCV 2018 Workshops, p.354-364

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Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets

2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2022, Vol.2022, p.238-242

2022

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Microscope‐based multiparameter laser scanning cytometer yielding data comparable to flow cytometry data

Cytometry (New York, N.Y.), 1991, Vol.12 (5), p.381-387

1991

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Active Learning Pipeline for Brain Mapping in a High Performance Computing Environment

2020 IEEE High Performance Extreme Computing Conference (HPEC), 2020, p.1-6

2020

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CellProfiler 3.0: Next-generation image processing for biology

Brain-wide mapping reveals that engrams for a single memory are distributed across multiple brain regions

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software

An open-source solution for advanced imaging flow cytometry data analysis using machine learning

Integrated platform for multiscale molecular imaging and phenotyping of the human brain

High- and low-throughput scoring of fat mass and body fat distribution in C. elegans

Scalable Interactive Visualization for Connectomics

A call for bioimaging software usability

Crowdsourcing the creation of image segmentation algorithms for connectomics

An image analysis toolbox for high-throughput C. elegans assays

Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data

Discovery of New Anti-Schistosomal Hits by Integration of QSAR-Based Virtual Screening and High Content Screening

Pharmacological HIF2α inhibition improves VHL disease-associated phenotypes in zebrafish model

QSAR-Driven Discovery of Novel Chemical Scaffolds Active against Schistosoma mansoni

Abstract 1578: Small molecule HIF-2a inhibitors down regulate its activity in vivo and ameliorate the vhl zebrafish phenotype

PI-09 PRECLINICAL TESTING OF SMALL MOLECULE HIF2α INHIBITOR IN ZEBRAFISH AND MOUSE MODELS OF VHL-DEFICIENT RENAL CELL CARCINOMA

Pharmacological HIF2[alpha] inhibition improves VHL disease-associated phenotypes in zebrafish model.(RESEARCH ARTICLE)

The antidepressant drug paroxetine as a new lead candidate in schistosome drug discovery

Slide-based laser scanning cytometry

The antidepressant drug paroxetine as a new lead candidate in schistosome drug discoveryThe authors declare no competing interests

Two Stream Active Query Suggestion for Active Learning in Connectomics

Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets

Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets

Microscope‐based multiparameter laser scanning cytometer yielding data comparable to flow cytometry data

Active Learning Pipeline for Brain Mapping in a High Performance Computing Environment

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