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Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis

BMC microbiology, 2023-12, Vol.23 (1), p.404-12, Article 404

2023

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Phylogenetic inference of changes in amino acid propensities with single-position resolution

PLoS computational biology, 2022-02, Vol.18 (2), p.e1009878-e1009878

2022

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An extended catalogue of tandem alternative splice sites in human tissue transcriptomes

PLoS computational biology, 2021-04, Vol.17 (4), p.e1008329-e1008329

2021

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Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins

Nature communications, 2024-01, Vol.15 (1), p.791-13, Article 791

2024

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GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES

Journal of cheminformatics, 2023-03, Vol.15 (1), p.37-11, Article 37

2023

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Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane

Journal of chemical information and modeling, 2022-10, Vol.62 (20), p.5023-5033

2022

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SPCS1-Dependent E2-p7 processing determines HCV Assembly efficiency

PLoS pathogens, 2022-02, Vol.18 (2), p.e1010310-e1010310

2022

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Effect of Cholecalciferol Supplementation on the Clinical Features and Inflammatory Markers in Hospitalized COVID-19 Patients: A Randomized, Open-Label, Single-Center Study

Nutrients, 2022-06, Vol.14 (13), p.2602

2022

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Vitamin D Intake May Reduce SARS-CoV-2 Infection Morbidity in Health Care Workers

Nutrients, 2022-01, Vol.14 (3), p.505

2022

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Impact of Genome Reduction on Bacterial Metabolism and Its Regulation

Science (American Association for the Advancement of Science), 2009-11, Vol.326 (5957), p.1263-1268

2009

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Consistent Prediction of Mutation Effect on Drug Binding in HIV‑1 Protease Using Alchemical Calculations

Journal of chemical theory and computation, 2018-07, Vol.14 (7), p.3397-3408

2018

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Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors

Retrovirology, 2020-05, Vol.17 (1), p.13-14, Article 13

2020

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Enthalpy–Entropy Compensation upon Molecular Conformational Changes

Journal of chemical theory and computation, 2015-04, Vol.11 (4), p.1410-1418

2015

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Vitamin D Status and Immune Response in Hospitalized Patients with Moderate and Severe COVID-19

Pharmaceuticals (Basel, Switzerland), 2022-03, Vol.15 (3), p.305

2022

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Protein Interactions: The Molecular Basis of Interactomics

1, 2022

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Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses

Viruses, 2015-10, Vol.7 (10), p.5388-5409

2015

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MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants

Bioinformatics (Oxford, England), 2023-03, Vol.39 (3)

2023

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DIGGER: exploring the functional role of alternative splicing in protein interactions

Nucleic acids research, 2021-01, Vol.49 (D1), p.D309-D318

2021

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SphereCon—a method for precise estimation of residue relative solvent accessible area from limited structural information

Bioinformatics, 2020-06, Vol.36 (11), p.3372-3378

2020

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Characterization of the Stereoselective P450 Enzyme BotCYP Enables the In Vitro Biosynthesis of the Bottromycin Core Scaffold

Journal of the American Chemical Society, 2020-12, Vol.142 (49), p.20560-20565

2020

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Combinations of protein-chemical complex structures reveal new targets for established drugs

PLoS computational biology, 2011-05, Vol.7 (5), p.e1002043

2011

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Combining specificity determining and conserved residues improves functional site prediction

BMC bioinformatics, 2009-06, Vol.10 (1), p.174-174, Article 174

2009

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Approach to Organizational Structure Modelling in Construction Companies

MATEC Web of Conferences, 2016, Vol.86, p.5028

2016

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Guiding questions to avoid data leakage in biological machine learning applications

Nature methods, 2024-08, Vol.21 (8), p.1444-1453

2024

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A shift of dynamic equilibrium between the KIT active and inactive states causes drug resistance

Proteins, structure, function, and bioinformatics, 2020-11, Vol.88 (11), p.1434-1446

2020

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Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis

Phylogenetic inference of changes in amino acid propensities with single-position resolution

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes

Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins

GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES

Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane

SPCS1-Dependent E2-p7 processing determines HCV Assembly efficiency

Effect of Cholecalciferol Supplementation on the Clinical Features and Inflammatory Markers in Hospitalized COVID-19 Patients: A Randomized, Open-Label, Single-Center Study

Vitamin D Intake May Reduce SARS-CoV-2 Infection Morbidity in Health Care Workers

Impact of Genome Reduction on Bacterial Metabolism and Its Regulation

Consistent Prediction of Mutation Effect on Drug Binding in HIV‑1 Protease Using Alchemical Calculations

Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors

Enthalpy–Entropy Compensation upon Molecular Conformational Changes

Vitamin D Status and Immune Response in Hospitalized Patients with Moderate and Severe COVID-19

Protein Interactions: The Molecular Basis of Interactomics

Sequence and Structure Analysis of Distantly-Related Viruses Reveals Extensive Gene Transfer between Viruses and Hosts and among Viruses

MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants

DIGGER: exploring the functional role of alternative splicing in protein interactions

SphereCon—a method for precise estimation of residue relative solvent accessible area from limited structural information

Characterization of the Stereoselective P450 Enzyme BotCYP Enables the In Vitro Biosynthesis of the Bottromycin Core Scaffold

Combinations of protein-chemical complex structures reveal new targets for established drugs

Combining specificity determining and conserved residues improves functional site prediction

Approach to Organizational Structure Modelling in Construction Companies

Guiding questions to avoid data leakage in biological machine learning applications

A shift of dynamic equilibrium between the KIT active and inactive states causes drug resistance

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