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Protein Interactions: The Molecular Basis of Interactomics

1, 2022

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Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis

BMC microbiology, 2023-12, Vol.23 (1), p.404-12, Article 404

2023

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MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants

Bioinformatics (Oxford, England), 2023-03, Vol.39 (3)

2023

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Phylogenetic inference of changes in amino acid propensities with single-position resolution

PLoS computational biology, 2022-02, Vol.18 (2), p.e1009878-e1009878

2022

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DIGGER: exploring the functional role of alternative splicing in protein interactions

Nucleic acids research, 2021-01, Vol.49 (D1), p.D309-D318

2021

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Characterization of the Stereoselective P450 Enzyme BotCYP Enables the In Vitro Biosynthesis of the Bottromycin Core Scaffold

Journal of the American Chemical Society, 2020-12, Vol.142 (49), p.20560-20565

2020

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An extended catalogue of tandem alternative splice sites in human tissue transcriptomes

PLoS computational biology, 2021-04, Vol.17 (4), p.e1008329-e1008329

2021

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SphereCon—a method for precise estimation of residue relative solvent accessible area from limited structural information

Bioinformatics, 2020-06, Vol.36 (11), p.3372-3378

2020

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The bottromycin epimerase BotH defines a group of atypical α/β-hydrolase-fold enzymes

Nature chemical biology, 2020-09, Vol.16 (9), p.1013-1018

2020

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SPCS1-Dependent E2-p7 processing determines HCV Assembly efficiency

PLoS pathogens, 2022-02, Vol.18 (2), p.e1010310-e1010310

2022

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Detection of atypical genes in virus families using a one-class SVM

BMC genomics, 2014-10, Vol.15 (1), p.913-913

2014

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Guiding questions to avoid data leakage in biological machine learning applications

Nature methods, 2024-08, Vol.21 (8), p.1444-1453

2024

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Cytokine Storm Signature in Patients with Moderate and Severe COVID-19

International journal of molecular sciences, 2022-08, Vol.23 (16), p.8879

2022

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Digital Technologies in Teaching and Learning Strategies: Proceedings of DTTLS-2021

1, 2022

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Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane

Journal of chemical information and modeling, 2022-10, Vol.62 (20), p.5023-5033

2022

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Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors

Retrovirology, 2020-05, Vol.17 (1), p.13-14, Article 13

2020

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Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins

Nature communications, 2024-01, Vol.15 (1), p.791-13, Article 791

2024

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GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES

Journal of cheminformatics, 2023-03, Vol.15 (1), p.37-11, Article 37

2023

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Adaptation of a Bacterial Multidrug Resistance System Revealed by the Structure and Function of AlbA

Journal of the American Chemical Society, 2018-12, Vol.140 (48), p.16641-16649

2018

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A shift of dynamic equilibrium between the KIT active and inactive states causes drug resistance

Proteins, structure, function, and bioinformatics, 2020-11, Vol.88 (11), p.1434-1446

2020

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StructMAn: annotation of single-nucleotide polymorphisms in the structural context

Nucleic acids research, 2016-07, Vol.44 (W1), p.W463-W468

2016

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The Significance of Phenotyping and Quantification of Plasma Extracellular Vesicles Levels Using High-Sensitivity Flow Cytometry during COVID-19 Treatment

Viruses, 2021-04, Vol.13 (5), p.767

2021

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Artificial intelligence for natural product drug discovery

Nature reviews. Drug discovery, 2023-11, Vol.22 (11), p.895-916

2023

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Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis

Nature chemistry, 2023-04, Vol.15 (4), p.560-568

2023

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Epistatic interactions promote persistence of NS3-Q80K in HCV infection by compensating for protein folding instability

The Journal of biological chemistry, 2021-09, Vol.297 (3), p.101031, Article 101031

2021

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Protein Interactions: The Molecular Basis of Interactomics

Machine learning and phylogenetic analysis allow for predicting antibiotic resistance in M. tuberculosis

MetaProFi: an ultrafast chunked Bloom filter for storing and querying protein and nucleotide sequence data for accurate identification of functionally relevant genetic variants

Phylogenetic inference of changes in amino acid propensities with single-position resolution

DIGGER: exploring the functional role of alternative splicing in protein interactions

Characterization of the Stereoselective P450 Enzyme BotCYP Enables the In Vitro Biosynthesis of the Bottromycin Core Scaffold

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes

SphereCon—a method for precise estimation of residue relative solvent accessible area from limited structural information

The bottromycin epimerase BotH defines a group of atypical α/β-hydrolase-fold enzymes

SPCS1-Dependent E2-p7 processing determines HCV Assembly efficiency

Detection of atypical genes in virus families using a one-class SVM

Guiding questions to avoid data leakage in biological machine learning applications

Cytokine Storm Signature in Patients with Moderate and Severe COVID-19

Digital Technologies in Teaching and Learning Strategies: Proceedings of DTTLS-2021

Modeling the Effect of Hydrophobicity on the Passive Permeation of Solutes across a Bacterial Model Membrane

Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors

Elucidation of unusual biosynthesis and DnaN-targeting mode of action of potent anti-tuberculosis antibiotics Mycoplanecins

GlyLES: Grammar-based Parsing of Glycans from IUPAC-condensed to SMILES

Adaptation of a Bacterial Multidrug Resistance System Revealed by the Structure and Function of AlbA

A shift of dynamic equilibrium between the KIT active and inactive states causes drug resistance

StructMAn: annotation of single-nucleotide polymorphisms in the structural context

The Significance of Phenotyping and Quantification of Plasma Extracellular Vesicles Levels Using High-Sensitivity Flow Cytometry during COVID-19 Treatment

Artificial intelligence for natural product drug discovery

Unusual peptide-binding proteins guide pyrroloindoline alkaloid formation in crocagin biosynthesis

Epistatic interactions promote persistence of NS3-Q80K in HCV infection by compensating for protein folding instability

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