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Shortest path counting in probabilistic biological networks

BMC bioinformatics, 2018-12, Vol.19 (1), p.465-465, Article 465

2018

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Topologically associating domains are stable units of replication-timing regulation

Nature (London), 2014-11, Vol.515 (7527), p.402-405

2014

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Identification of co-evolving temporal networks

BMC genomics, 2019-06, Vol.20 (Suppl 6), p.434-434, Article 434

2019

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Motifs in the assembly of food web networks

Oikos, 2016-04, Vol.125 (4), p.480-491

2016

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Characterizing building blocks of resource constrained biological networks

BMC bioinformatics, 2019-06, Vol.20 (Suppl 12), p.318-318, Article 318

2019

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ProMotE: an efficient algorithm for counting independent motifs in uncertain network topologies

BMC bioinformatics, 2018-06, Vol.19 (1), p.242-242, Article 242

2018

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Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

Genome research, 2015-08, Vol.25 (8), p.1091-1103

2015

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Integrating Domain Specific Knowledge and Network Analysis to Predict Drug Sensitivity of Cancer Cell Lines

PloS one, 2016-09, Vol.11 (9), p.e0162173-e0162173

2016

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Selected Research Articles from the 2019 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

BMC genomics, 2020-09, Vol.21 (Suppl 9), p.584-584, Article 584

2020

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Scalable steady state analysis of Boolean biological regulatory networks

PloS one, 2009-12, Vol.4 (12), p.e7992-e7992

2009

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A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification

The EMBO journal, 2011-03, Vol.30 (5), p.882-893

2011

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Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

BMC bioinformatics, 2019-06, Vol.20 (Suppl 12), p.316-316, Article 316

2019

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Selected research articles from the 2017 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

BMC bioinformatics, 2018-03, Vol.19 (Suppl 3), p.69-69, Article 69

2018

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HIDEN: Hierarchical decomposition of regulatory networks

BMC bioinformatics, 2012-09, Vol.13 (1), p.250-250, Article 250

2012

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Identification of large disjoint motifs in biological networks

BMC bioinformatics, 2016-10, Vol.17 (1), p.408-408, Article 408

2016

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Metabolic network alignment in large scale by network compression

BMC bioinformatics, 2012-03, Vol.13 Suppl 3 (Suppl 3), p.S2-S2, Article S2

2012

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Metabolomic analysis reveals extended metabolic consequences of marginal vitamin B-6 deficiency in healthy human subjects

PloS one, 2013-06, Vol.8 (6), p.e63544-e63544

2013

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A scalable method for identifying frequent subtrees in sets of large phylogenetic trees

BMC bioinformatics, 2012-10, Vol.13 (1), p.256-256, Article 256

2012

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CMRF: analyzing differential gene regulation in two group perturbation experiments

BMC genomics, 2012-04, Vol.13 Suppl 2 (Suppl 2), p.S2-S2

2012

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Signal reachability facilitates characterization of probabilistic signaling networks

BMC bioinformatics, 2015-12, Vol.16 Suppl 17 (S17), p.S6-S6, Article S6

2015

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Network-based Prediction of Cancer under Genetic Storm

Cancer informatics, 2014-01, Vol.2014 (Suppl. 3), p.15-31

2014

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Data Perturbation and Recovery of Time Series Gene Expression Data

IEEE/ACM transactions on computational biology and bioinformatics, 2022-03, Vol.19 (2), p.830-842

2022

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Indexing a protein-protein interaction network expedites network alignment

BMC bioinformatics, 2015-10, Vol.16 (1), p.326-326, Article 326

2015

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IDEEA: Information diffusion model for integrating gene expression and EEG data in identifying Alzheimer's Disease markers

Machine learning: science and technology, 2024-10

2024

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Aligning optical maps to de Bruijn graphs

Bioinformatics, 2019-09, Vol.35 (18), p.3250-3256

2019

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Shortest path counting in probabilistic biological networks

Topologically associating domains are stable units of replication-timing regulation

Identification of co-evolving temporal networks

Motifs in the assembly of food web networks

Characterizing building blocks of resource constrained biological networks

ProMotE: an efficient algorithm for counting independent motifs in uncertain network topologies

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

Integrating Domain Specific Knowledge and Network Analysis to Predict Drug Sensitivity of Cancer Cell Lines

Selected Research Articles from the 2019 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Scalable steady state analysis of Boolean biological regulatory networks

A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification

Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Selected research articles from the 2017 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

HIDEN: Hierarchical decomposition of regulatory networks

Identification of large disjoint motifs in biological networks

Metabolic network alignment in large scale by network compression

Metabolomic analysis reveals extended metabolic consequences of marginal vitamin B-6 deficiency in healthy human subjects

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees

CMRF: analyzing differential gene regulation in two group perturbation experiments

Signal reachability facilitates characterization of probabilistic signaling networks

Network-based Prediction of Cancer under Genetic Storm

Data Perturbation and Recovery of Time Series Gene Expression Data

Indexing a protein-protein interaction network expedites network alignment

IDEEA: Information diffusion model for integrating gene expression and EEG data in identifying Alzheimer's Disease markers

Aligning optical maps to de Bruijn graphs

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