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HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins

PloS one, 2009-08, Vol.4 (8), p.e6687-e6687

2009

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FaST linear mixed models for genome-wide association studies

Nature methods, 2011-10, Vol.8 (10), p.833-835

2011

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Early Selection in Gag by Protective HLA Alleles Contributes to Reduced HIV-1 Replication Capacity That May Be Largely Compensated for in Chronic Infection

Journal of Virology, 2010-11, Vol.84 (22), p.11937-11949

2010

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Improved linear mixed models for genome-wide association studies

Nature methods, 2012-06, Vol.9 (6), p.525-526

2012

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Gag-Protease-Mediated Replication Capacity in HIV-1 Subtype C Chronic Infection: Associations with HLA Type and Clinical Parameters

Journal of Virology, 2010-10, Vol.84 (20), p.10820-10831

2010

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Reduced replication capacity of NL4-3 recombinant viruses encoding reverse transcriptase-integrase sequences from HIV-1 elite controllers

Journal of acquired immune deficiency syndromes (1999), 2011-02, Vol.56 (2), p.100-108

2011

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HIV―1 adaptation to NK―cell―mediated immune pressure

Nature (London), 2011-08, Vol.476 (7358), p.96-100

2011

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A powerful and efficient set test for genetic markers that handles confounders

Bioinformatics, 2013-06, Vol.29 (12), p.1526-1533

2013

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The benefits of selecting phenotype-specific variants for applications of mixed models in genomics

Scientific reports, 2013-05, Vol.3 (1), p.1815-1815, Article 1815

2013

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An exhaustive epistatic SNP association analysis on expanded Wellcome Trust data

Scientific reports, 2013, Vol.3 (1), p.1099-1099, Article 1099

2013

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CORRIGENDUM: An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data

Scientific reports, 2013-02, Vol.3, p.1321

2013

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Correction: Corrigendum: An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data

Scientific reports, 2013-02, Vol.3 (1), Article 1321

2013

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I - Applying Library Intellectual Freedom Principles to Public and Academic Computers

Computerization and Controversy, 1996, p.569-579

Kadie, Carl M.

Second Edition, 1996

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Conceptual Set Covering: Improving Fit-And-Split Algorithms

Machine Learning Proceedings 1990, 1990, p.40-48

Kadie, Carl M.

1990

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Diffy-S: Learning Robot Operator Schemata from Examples

Machine Learning Proceedings 1988, 1988, p.430-436

KADIE, CARL M.

1988

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Book reviews

Artificial Intelligence Review, 1991, Vol.5 (1-2), p.121-141

1991

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Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1

Journal of Virology, 2012-05, Vol.86 (9), p.5230-5243

2012

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Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection

Journal of Virology, 2010-10, Vol.84 (19), p.9879-9888

2010

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Marked Epitope- and Allele-Specific Differences in Rates of Mutation in Human Immunodeficiency Type 1 (HIV-1) Gag, Pol, and Nef Cytotoxic T-Lymphocyte Epitopes in Acute/Early HIV-1 Infection

Journal of Virology, 2008-09, Vol.82 (18), p.9216-9227

2008

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HLA Class I-Driven Evolution of Human Immunodeficiency Virus Type 1 Subtype C Proteome: Immune Escape and Viral Load

Journal of Virology, 2008-07, Vol.82 (13), p.6434-6446

2008

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Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag

PLoS computational biology, 2008-11, Vol.4 (11), p.e1000225-e1000225

2008

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Extensive HLA class I allele promiscuity among viral CTL epitopes

European journal of immunology, 2007-09, Vol.37 (9), p.2419-2433

2007

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HIV control is mediated in part by CD8+ T-cell targeting of specific epitopes

Journal of virology, 2014-11, Vol.88 (22), p.12937-12948

2014

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Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and their association with viral load in chronic untreated infection

AIDS (London), 2008-07, Vol.22 (11), p.1277-1286

2008

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High-dimensional immunomonitoring models of HIV-1–specific CD8 T-cell responses accurately identify subjects achieving spontaneous viral control

Blood, 2013-01, Vol.121 (5), p.801-811

2013

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HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins

FaST linear mixed models for genome-wide association studies

Early Selection in Gag by Protective HLA Alleles Contributes to Reduced HIV-1 Replication Capacity That May Be Largely Compensated for in Chronic Infection

Improved linear mixed models for genome-wide association studies

Gag-Protease-Mediated Replication Capacity in HIV-1 Subtype C Chronic Infection: Associations with HLA Type and Clinical Parameters

Reduced replication capacity of NL4-3 recombinant viruses encoding reverse transcriptase-integrase sequences from HIV-1 elite controllers

HIV―1 adaptation to NK―cell―mediated immune pressure

A powerful and efficient set test for genetic markers that handles confounders

The benefits of selecting phenotype-specific variants for applications of mixed models in genomics

An exhaustive epistatic SNP association analysis on expanded Wellcome Trust data

CORRIGENDUM: An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data

Correction: Corrigendum: An Exhaustive Epistatic SNP Association Analysis on Expanded Wellcome Trust Data

I - Applying Library Intellectual Freedom Principles to Public and Academic Computers

Conceptual Set Covering: Improving Fit-And-Split Algorithms

Diffy-S: Learning Robot Operator Schemata from Examples

Book reviews

Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1

Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection

Marked Epitope- and Allele-Specific Differences in Rates of Mutation in Human Immunodeficiency Type 1 (HIV-1) Gag, Pol, and Nef Cytotoxic T-Lymphocyte Epitopes in Acute/Early HIV-1 Infection

HLA Class I-Driven Evolution of Human Immunodeficiency Virus Type 1 Subtype C Proteome: Immune Escape and Viral Load

Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag

Extensive HLA class I allele promiscuity among viral CTL epitopes

HIV control is mediated in part by CD8+ T-cell targeting of specific epitopes

Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and their association with viral load in chronic untreated infection

High-dimensional immunomonitoring models of HIV-1–specific CD8 T-cell responses accurately identify subjects achieving spontaneous viral control

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