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Protein interaction landscapes revealed by advanced in vivo cross-linking–mass spectrometry

Proceedings of the National Academy of Sciences - PNAS, 2021-08, Vol.118 (32), p.1-12

2021

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Oxidative Stress-Mediated Regulation of Proteasome Complexes

Molecular & cellular proteomics, 2011-05, Vol.10 (5), p.R110.006924, Article R110.006924

2011

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Profiling of Protein Interaction Networks of Protein Complexes Using Affinity Purification and Quantitative Mass Spectrometry

Molecular & cellular proteomics, 2010-08, Vol.9 (8), p.1650-1665

2010

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Signal-Induced Disassembly of the SCF Ubiquitin Ligase Complex by Cdc48/p97

Molecular cell, 2012-10, Vol.48 (2), p.288-297

2012

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The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity

Cell, 2017-05, Vol.169 (4), p.679-692.e14

2017

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A systems approach to infectious disease

Nature reviews. Genetics, 2020-06, Vol.21 (6), p.339-354

2020

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Computational prediction and experimental verification of new MAP kinase docking sites and substrates including Gli transcription factors

PLoS computational biology, 2010-08, Vol.6 (8), p.e1000908

2010

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Mapping the Protein Interaction Network of the Human COP9 Signalosome Complex Using a Label-free QTAX Strategy

Molecular & cellular proteomics, 2012-05, Vol.11 (5), p.138-147

2012

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From systems to structure - using genetic data to model protein structures

Nature reviews. Genetics, 2022-06, Vol.23 (6), p.342-354

2022

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A New in Vivo Cross-linking Mass Spectrometry Platform to Define Protein–Protein Interactions in Living Cells

Molecular & cellular proteomics, 2014-12, Vol.13 (12), p.3533-3543

2014

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Proteomic Approaches to Study SARS-CoV‑2 Biology and COVID-19 Pathology

Journal of proteome research, 2021-02, Vol.20 (2), p.1133-1152

2021

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RNA Binding and Core Complexes Constitute the U-Insertion/Deletion Editosome

Molecular and cellular biology, 2014-12, Vol.34 (23), p.4329-4342

2014

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De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking

Cell, 2023-11, Vol.186 (23), p.5041-5053.e19

2023

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Structural basis of CD4 downregulation by HIV-1 Nef

Nature structural & molecular biology, 2020-09, Vol.27 (9), p.822-828

2020

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Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13

Nature structural & molecular biology, 2023-03, Vol.30 (3), p.296-308

2023

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Protein Interaction Map of APOBEC3 Enzyme Family Reveals Deamination-Independent Role in Cellular Function

Molecular & cellular proteomics, 2024-05, Vol.23 (5), p.100755-100755, Article 100755

2024

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EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion

Scientific reports, 2018-09, Vol.8 (1), p.13269-16, Article 13269

2018

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Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes

Molecular & cellular proteomics, 2021, Vol.20, p.100132, Article 100132

2021

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Synthesis of two new enrichable and MS-cleavable cross-linkers to define protein-protein interactions by mass spectrometry

Organic & biomolecular chemistry, 2015-05, Vol.13 (17), p.5030-5037

2015

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Characterizing the dynamics of proteasome complexes by proteomics approaches

Antioxidants & redox signaling, 2014-12, Vol.21 (17), p.2444-2456

2014

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A BAG3 chaperone complex maintains cardiomyocyte function during proteotoxic stress

JCI insight, 2017-07, Vol.2 (14)

2017

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Combining docking site and phosphosite predictions to find new substrates: Identification of smoothelin-like-2 (SMTNL2) as a c-Jun N-terminal kinase (JNK) substrate

Cellular signalling, 2013-12, Vol.25 (12), p.2518-2529

2013

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Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy

Journal of proteome research, 2010-04, Vol.9 (4), p.2016-2029

2010

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Selective Enrichment and Identification of Azide-tagged Cross-Linked Peptides Using Chemical Ligation and Mass Spectrometry

Journal of the American Society for Mass Spectrometry, 2010-08, Vol.21 (8), p.1432-1445

2010

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Protein interaction landscapes revealed by advanced in vivo cross-linking–mass spectrometry

Oxidative Stress-Mediated Regulation of Proteasome Complexes

Profiling of Protein Interaction Networks of Protein Complexes Using Affinity Purification and Quantitative Mass Spectrometry

Signal-Induced Disassembly of the SCF Ubiquitin Ligase Complex by Cdc48/p97

The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity

CRISPR-Cas9 screen of E3 ubiquitin ligases identifies TRAF2 and UHRF1 as regulators of HIV latency in primary human T cells

A systems approach to infectious disease

Computational prediction and experimental verification of new MAP kinase docking sites and substrates including Gli transcription factors

Mapping the Protein Interaction Network of the Human COP9 Signalosome Complex Using a Label-free QTAX Strategy

From systems to structure - using genetic data to model protein structures

A New in Vivo Cross-linking Mass Spectrometry Platform to Define Protein–Protein Interactions in Living Cells

Proteomic Approaches to Study SARS-CoV‑2 Biology and COVID-19 Pathology

RNA Binding and Core Complexes Constitute the U-Insertion/Deletion Editosome

De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking

Structural basis of CD4 downregulation by HIV-1 Nef

Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13

Protein Interaction Map of APOBEC3 Enzyme Family Reveals Deamination-Independent Role in Cellular Function

EpCAM homo-oligomerization is not the basis for its role in cell-cell adhesion

Characterization of an A3G-VifHIV-1-CRL5-CBFβ Structure Using a Cross-linking Mass Spectrometry Pipeline for Integrative Modeling of Host–Pathogen Complexes

Synthesis of two new enrichable and MS-cleavable cross-linkers to define protein-protein interactions by mass spectrometry

Characterizing the dynamics of proteasome complexes by proteomics approaches

A BAG3 chaperone complex maintains cardiomyocyte function during proteotoxic stress

Combining docking site and phosphosite predictions to find new substrates: Identification of smoothelin-like-2 (SMTNL2) as a c-Jun N-terminal kinase (JNK) substrate

Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy

Selective Enrichment and Identification of Azide-tagged Cross-Linked Peptides Using Chemical Ligation and Mass Spectrometry

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