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A novel mutual information-based Boolean network inference method from time-series gene expression data

PloS one, 2017-02, Vol.12 (2), p.e0171097-e0171097

2017

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A Boolean network inference from time-series gene expression data using a genetic algorithm

Bioinformatics, 2018-09, Vol.34 (17), p.i927-i933

2018

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RMut: R package for a Boolean sensitivity analysis against various types of mutations

PloS one, 2019-03, Vol.14 (3), p.e0213736-e0213736

2019

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Hierarchical closeness-based properties reveal cancer survivability and biomarker genes in molecular signaling networks

PloS one, 2018-06, Vol.13 (6), p.e0199109-e0199109

2018

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In Silico Pleiotropy Analysis in KEGG Signaling Networks Using a Boolean Network Model

Biomolecules (Basel, Switzerland), 2022-08, Vol.12 (8), p.1139

2022

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Mutual Information Based on Multiple Level Discretization Network Inference from Time Series Gene Expression Profiles

Applied sciences, 2023-11, Vol.13 (21), p.11902

2023

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biphasic behavior of incoherent feed-forward loops in biomolecular regulatory networks

BioEssays, 2008-11, Vol.30 (11-12), p.1204-1211

2008

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A coherent feedforward loop design principle to sustain robustness of biological networks

Bioinformatics, 2013-03, Vol.29 (5), p.630-637

2013

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PANET: a GPU-based tool for fast parallel analysis of robustness dynamics and feed-forward/feedback loop structures in large-scale biological networks

PloS one, 2014-07, Vol.9 (7), p.e103010-e103010

2014

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A Hybrid Neurogenetic Approach for Stock Forecasting

IEEE transaction on neural networks and learning systems, 2007-05, Vol.18 (3), p.851-864

2007

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Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics

Bioinformatics, 2008-04, Vol.24 (7), p.987-994

2008

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A Data-Independent Genetic Algorithm Framework for Fault-Type Classification and Remaining Useful Life Prediction

Applied sciences, 2020-01, Vol.10 (1), p.368

2020

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A neuro-evolution approach to infer a Boolean network from time-series gene expressions

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i762-i769

2020

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Effects of ordered mutations on dynamics in signaling networks

BMC medical genomics, 2020-02, Vol.13 (Suppl 4), p.13-13, Article 13

2020

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Coupled positive and negative feedback circuits form an essential building block of cellular signaling pathways

BioEssays, 2007-01, Vol.29 (1), p.85-90

2007

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GPEC: A Cytoscape plug-in for random walk-based gene prioritization and biomedical evidence collection

Computational biology and chemistry, 2012-04, Vol.37, p.17-23

2012

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An Empirical Study on Importance of Modeling Parameters and Trading Volume-Based Features in Daily Stock Trading Using Neural Networks

Informatics (Basel), 2018-09, Vol.5 (3), p.36

2018

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Dynamical Robustness against Multiple Mutations in Signaling Networks

IEEE/ACM transactions on computational biology and bioinformatics, 2016-09, Vol.13 (5), p.996-1002

2016

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Boolean Dynamics of Biological Networks with Multiple Coupled Feedback Loops

Biophysical journal, 2007-04, Vol.92 (8), p.2975-2981

2007

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MORO: a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks

BMC systems biology, 2016-12, Vol.10 (Suppl 4), p.122-122, Article 122

2016

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A novel constrained genetic algorithm-based Boolean network inference method from steady-state gene expression data

Bioinformatics, 2021-07, Vol.37 (Supplement_1), p.i383-i391

2021

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Reduction of complex signaling networks to a representative kernel

Science signaling, 2011-05, Vol.4 (175), p.ra35

2011

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Analysis of feedback loops and robustness in network evolution based on Boolean models

BMC bioinformatics, 2007-11, Vol.8 (1), p.430-430, Article 430

2007

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An Empirical Investigation on a Multiple Filters-Based Approach for Remaining Useful Life Prediction

Machines (Basel), 2018-09, Vol.6 (3), p.35

2018

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A hybrid technique for medical image segmentation

BioMed research international, 2012-01, Vol.2012, p.830252-7

2012

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A novel mutual information-based Boolean network inference method from time-series gene expression data

A Boolean network inference from time-series gene expression data using a genetic algorithm

RMut: R package for a Boolean sensitivity analysis against various types of mutations

Hierarchical closeness-based properties reveal cancer survivability and biomarker genes in molecular signaling networks

In Silico Pleiotropy Analysis in KEGG Signaling Networks Using a Boolean Network Model

Mutual Information Based on Multiple Level Discretization Network Inference from Time Series Gene Expression Profiles

biphasic behavior of incoherent feed-forward loops in biomolecular regulatory networks

A coherent feedforward loop design principle to sustain robustness of biological networks

PANET: a GPU-based tool for fast parallel analysis of robustness dynamics and feed-forward/feedback loop structures in large-scale biological networks

A Hybrid Neurogenetic Approach for Stock Forecasting

Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics

A Data-Independent Genetic Algorithm Framework for Fault-Type Classification and Remaining Useful Life Prediction

A neuro-evolution approach to infer a Boolean network from time-series gene expressions

Effects of ordered mutations on dynamics in signaling networks

Coupled positive and negative feedback circuits form an essential building block of cellular signaling pathways

GPEC: A Cytoscape plug-in for random walk-based gene prioritization and biomedical evidence collection

An Empirical Study on Importance of Modeling Parameters and Trading Volume-Based Features in Daily Stock Trading Using Neural Networks

Dynamical Robustness against Multiple Mutations in Signaling Networks

Boolean Dynamics of Biological Networks with Multiple Coupled Feedback Loops

MORO: a Cytoscape app for relationship analysis between modularity and robustness in large-scale biological networks

A novel constrained genetic algorithm-based Boolean network inference method from steady-state gene expression data

Reduction of complex signaling networks to a representative kernel

Analysis of feedback loops and robustness in network evolution based on Boolean models

An Empirical Investigation on a Multiple Filters-Based Approach for Remaining Useful Life Prediction

A hybrid technique for medical image segmentation

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