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Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification

2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2016, Vol.2016, p.2424-2433

2016

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Robust Histopathology Image Analysis: To Label or to Synthesize?

2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 2019, Vol.2019, p.8525-8534

2019

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Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images

Pattern recognition, 2019-02, Vol.86, p.188-200

2019

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ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification

Computer methods and programs in biomedicine, 2023-09, Vol.239, p.107631-107631, Article 107631

2023

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Methods for Segmentation and Classification of Digital Microscopy Tissue Images

Frontiers in bioengineering and biotechnology, 2019-04, Vol.7, p.53-53

2019

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Twenty Years of Digital Pathology: An Overview of the Road Travelled, What is on the Horizon, and the Emergence of Vendor-Neutral Archives

Journal of pathology informatics, 2018-01, Vol.9 (1), p.40-40, Article 40

2018

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Multi-Class Cell Detection Using Spatial Context Representation

2021 IEEE/CVF International Conference on Computer Vision (ICCV), 2021, Vol.2021, p.3985-3994

2021

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Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

Journal of the American Medical Informatics Association : JAMIA, 2013-11, Vol.20 (6), p.1091-1098

2013

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A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images

Cancer research (Chicago, Ill.), 2017-11, Vol.77 (21), p.e79-e82

2017

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ADIOS 2: The Adaptable Input Output System. A framework for high-performance data management

SoftwareX, 2020-07, Vol.12 (C), p.100561, Article 100561

2020

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Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis

2014 IEEE 28th International Parallel and Distributed Processing Symposium, 2014-05, Vol.2014, p.1063-1072

2014

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Dataset of segmented nuclei in hematoxylin and eosin stained histopathology images of ten cancer types

Scientific data, 2020-06, Vol.7 (1), p.185-185, Article 185

2020

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Deep Learning-Based Mapping of Tumor Infiltrating Lymphocytes in Whole Slide Images of 23 Types of Cancer

Frontiers in oncology, 2022-02, Vol.11, p.806603

2022

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The Tumor Microenvironment Strongly Impacts Master Transcriptional Regulators and Gene Expression Class of Glioblastoma

The American journal of pathology, 2012-05, Vol.180 (5), p.2108-2119

2012

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Segmentation and Classification in Digital Pathology for Glioma Research: Challenges and Deep Learning Approaches

Frontiers in neuroscience, 2020-02, Vol.14, p.27-27

2020

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Deep learning-based image analysis methods for brightfield-acquired multiplex immunohistochemistry images

Diagnostic pathology, 2020-07, Vol.15 (1), p.100-100, Article 100

2020

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Deep learning for survival analysis in breast cancer with whole slide image data

Bioinformatics, 2022-07, Vol.38 (14), p.3629-3637

2022

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Spatial Characterization of Tumor-Infiltrating Lymphocytes and Breast Cancer Progression

Cancers, 2022-04, Vol.14 (9), p.2148

2022

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Automated digital TIL analysis (ADTA) adds prognostic value to standard assessment of depth and ulceration in primary melanoma

Scientific reports, 2021-02, Vol.11 (1), p.2809-2809, Article 2809

2021

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Keratin 17 modulates the immune topography of pancreatic cancer

Journal of translational medicine, 2024-05, Vol.22 (1), p.443-16, Article 443

2024

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The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas

PloS one, 2010-09, Vol.5 (9), p.e12548-e12548

2010

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A Methodology for Texture Feature-based Quality Assessment in Nucleus Segmentation of Histopathology Image

Journal of pathology informatics, 2017-01, Vol.8 (1), p.38-38, Article 38

2017

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caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid

Bioinformatics, 2006-08, Vol.22 (15), p.1910-1916

2006

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Open and reusable deep learning for pathology with WSInfer and QuPath

NPJ precision oncology, 2024-01, Vol.8 (1), p.9-9, Article 9

2024

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An Intelligent Search & Retrieval System (IRIS) and Clinical and Research Repository for Decision Support Based on Machine Learning and Joint Kernel-based Supervised Hashing

Cancer informatics, 2024-01, Vol.23, p.11769351231223806-11769351231223806

2024

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Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification

Robust Histopathology Image Analysis: To Label or to Synthesize?

Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images

ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification

Methods for Segmentation and Classification of Digital Microscopy Tissue Images

Twenty Years of Digital Pathology: An Overview of the Road Travelled, What is on the Horizon, and the Emergence of Vendor-Neutral Archives

Multi-Class Cell Detection Using Spatial Context Representation

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images

ADIOS 2: The Adaptable Input Output System. A framework for high-performance data management

Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis

Dataset of segmented nuclei in hematoxylin and eosin stained histopathology images of ten cancer types

Deep Learning-Based Mapping of Tumor Infiltrating Lymphocytes in Whole Slide Images of 23 Types of Cancer

The Tumor Microenvironment Strongly Impacts Master Transcriptional Regulators and Gene Expression Class of Glioblastoma

Segmentation and Classification in Digital Pathology for Glioma Research: Challenges and Deep Learning Approaches

Deep learning-based image analysis methods for brightfield-acquired multiplex immunohistochemistry images

Deep learning for survival analysis in breast cancer with whole slide image data

Spatial Characterization of Tumor-Infiltrating Lymphocytes and Breast Cancer Progression

Automated digital TIL analysis (ADTA) adds prognostic value to standard assessment of depth and ulceration in primary melanoma

Keratin 17 modulates the immune topography of pancreatic cancer

The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas

A Methodology for Texture Feature-based Quality Assessment in Nucleus Segmentation of Histopathology Image

caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid

Open and reusable deep learning for pathology with WSInfer and QuPath

An Intelligent Search & Retrieval System (IRIS) and Clinical and Research Repository for Decision Support Based on Machine Learning and Joint Kernel-based Supervised Hashing

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