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Analyzing Patient Trajectories With Artificial Intelligence

Journal of medical Internet research, 2021-12, Vol.23 (12), p.e29812-e29812

2021

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AttentionDDI: Siamese attention-based deep learning method for drug-drug interaction predictions

BMC bioinformatics, 2021-08, Vol.22 (1), p.412-19, Article 412

2021

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Oncolytic virotherapy-mediated anti-tumor response: a single-cell perspective

Cancer cell, 2021-03, Vol.39 (3), p.394-406.e4

2021

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Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas

Nature genetics, 2015-09, Vol.47 (9), p.996-1002

2015

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AutoDiscern: rating the quality of online health information with hierarchical encoder attention-based neural networks

BMC medical informatics and decision making, 2020-06, Vol.20 (1), p.104-104, Article 104

2020

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Predicting base editing outcomes with an attention-based deep learning algorithm trained on high-throughput target library screens

Nature communications, 2021-08, Vol.12 (1), p.5114-5114, Article 5114

2021

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Germline MC1R status influences somatic mutation burden in melanoma

Nature communications, 2016-07, Vol.7 (1), p.12064-7, Article 12064

2016

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Term identification in the biomedical literature

Journal of biomedical informatics, 2004-12, Vol.37 (6), p.512-526

2004

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Yale Image Finder (YIF): a new search engine for retrieving biomedical images

Bioinformatics, 2008-09, Vol.24 (17), p.1968-1970

2008

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Prototyping a precision oncology 3.0 rapid learning platform

BMC bioinformatics, 2018-09, Vol.19 (1), p.341-341, Article 341

2018

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Genome-wide screen of promoter methylation identifies novel markers in melanoma

Genome Research, 2009-08, Vol.19 (8), p.1462-1470

2009

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Former smoking, but not active smoking, is associated with delirium in postoperative ICU patients: a matched case-control study

Frontiers in psychiatry, 2024, Vol.15, p.1347071-1347071

2024

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The Gene Expression Profile of Uropathogenic Escherichia coli in Women with Uncomplicated Urinary Tract Infections Is Recapitulated in the Mouse Model

mBio, 2020-08, Vol.11 (4)

2020

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Prospective observational study of the role of the microbiome in BCG responsiveness prediction (SILENT-EMPIRE): a study protocol

BMJ open, 2022-04, Vol.12 (4), p.e061421-e061421

2022

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Type II p21-activated kinases (PAKs) are regulated by an autoinhibitory pseudosubstrate

Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (40), p.16107-16112

2012

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Melanoma Prognostic Model Using Tissue Microarrays and Genetic Algorithms

Journal of clinical oncology, 2009-12, Vol.27 (34), p.5772-5779

2009

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GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles

Bioinformatics (Oxford, England), 2001-06, Vol.17 Suppl 1 (suppl_1), p.S74-S82

2001

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MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment

Genome Research, 2008-10, Vol.18 (10), p.1652-1659

2008

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MicroRNA signatures differentiate melanoma subtypes

Cell cycle (Georgetown, Tex.), 2011-06, Vol.10 (11), p.1845-1852

2011

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Decentralized provenance-aware publishing with nanopublications

PeerJ. Computer science, 2016-08, Vol.2, p.e78, Article e78

2016

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Phosphoproteomic screen identifies potential therapeutic targets in melanoma

Molecular cancer research, 2011-06, Vol.9 (6), p.801-812

2011

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Explainable deep learning for disease activity prediction in chronic inflammatory joint diseases

PLOS digital health, 2024-06, Vol.3 (6), p.e0000422

2024

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Structural similarity assessment for drug sensitivity prediction in cancer

BMC bioinformatics, 2009-09, Vol.10 Suppl 9 (S9), p.S17-S17, Article S17

2009

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RASopathy Gene Mutations in Melanoma

Journal of investigative dermatology, 2016-09, Vol.136 (9), p.1755-1759

2016

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Molecular Triangulation: Bridging Linkage and Molecular-Network Information for Identifying Candidate Genes in Alzheimer's Disease

Proceedings of the National Academy of Sciences - PNAS, 2004-10, Vol.101 (42), p.15148-15153

2004

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Analyzing Patient Trajectories With Artificial Intelligence

AttentionDDI: Siamese attention-based deep learning method for drug-drug interaction predictions

Oncolytic virotherapy-mediated anti-tumor response: a single-cell perspective

Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas

AutoDiscern: rating the quality of online health information with hierarchical encoder attention-based neural networks

Predicting base editing outcomes with an attention-based deep learning algorithm trained on high-throughput target library screens

Germline MC1R status influences somatic mutation burden in melanoma

Term identification in the biomedical literature

Yale Image Finder (YIF): a new search engine for retrieving biomedical images

Prototyping a precision oncology 3.0 rapid learning platform

Genome-wide screen of promoter methylation identifies novel markers in melanoma

Former smoking, but not active smoking, is associated with delirium in postoperative ICU patients: a matched case-control study

The Gene Expression Profile of Uropathogenic Escherichia coli in Women with Uncomplicated Urinary Tract Infections Is Recapitulated in the Mouse Model

Prospective observational study of the role of the microbiome in BCG responsiveness prediction (SILENT-EMPIRE): a study protocol

Type II p21-activated kinases (PAKs) are regulated by an autoinhibitory pseudosubstrate

Melanoma Prognostic Model Using Tissue Microarrays and Genetic Algorithms

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles

MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment

MicroRNA signatures differentiate melanoma subtypes

Decentralized provenance-aware publishing with nanopublications

Phosphoproteomic screen identifies potential therapeutic targets in melanoma

Explainable deep learning for disease activity prediction in chronic inflammatory joint diseases

Structural similarity assessment for drug sensitivity prediction in cancer

RASopathy Gene Mutations in Melanoma

Molecular Triangulation: Bridging Linkage and Molecular-Network Information for Identifying Candidate Genes in Alzheimer's Disease

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