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C-to-U and U-to-C: RNA editing in plant organelles and beyond

Journal of experimental botany, 2023-04, Vol.74 (7), p.2273-2294

2023

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Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0

BMC bioinformatics, 2018-07, Vol.19 (1), p.255-255, Article 255

2018

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mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

Current genetics, 2004-09, Vol.46 (3), p.123-139

Knoop, V

2004

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Expected and unexpected evolution of plant RNA editing factors CLB19, CRR28 and RARE1: retention of CLB19 despite a phylogenetically deep loss of its two known editing targets in Poaceae

BMC evolutionary biology, 2018-06, Vol.18 (1), p.85

2018

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Beyond a PPR-RNA recognition code: Many aspects matter for the multi-targeting properties of RNA editing factor PPR56

PLoS genetics, 2023-08, Vol.19 (8), p.e1010733-e1010733

2023

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Plant mitochondrial genome peculiarities evolving in the earliest vascular plant lineages

Journal of systematics and evolution : JSE, 2013-01, Vol.51 (1), p.1-12

KNOOP, Volker

2013

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Chloroplast RNA editing going extreme: more than 3400 events of C-to-U editing in the chloroplast transcriptome of the lycophyte Selaginella uncinata

RNA (Cambridge), 2014-10, Vol.20 (10), p.1499-1506

2014

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A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

Nucleic acids research, 2009-08, Vol.37 (15), p.5093

2009

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Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis

The New phytologist, 2020-03, Vol.225 (5), p.1974-1992

2020

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Horsetails are the sister group to all other monilophytes and Marattiales are sister to leptosporangiate ferns

Molecular phylogenetics and evolution, 2015-09, Vol.90, p.140-149

2015

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Categorizing 161 plant (streptophyte) mitochondrial group II introns into 29 families of related paralogues finds only limited links between intron mobility and intron-borne maturases

BMC ecology and evolution, 2023-03, Vol.23 (1), p.5-5, Article 5

2023

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Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes

Genome biology and evolution, 2011-01, Vol.3, p.344-358

2011

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When you can't trust the DNA: RNA editing changes transcript sequences

Cellular and molecular life sciences : CMLS, 2011-02, Vol.68 (4), p.567-586

Knoop, Volker

2011

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Plant-type pentatricopeptide repeat proteins with a DYW domain drive C-to-U RNA editing in Escherichia coli

Communications biology, 2019-03, Vol.2 (1), p.85-85, Article 85

2019

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The Expansion and Diversification of Pentatricopeptide Repeat RNA-Editing Factors in Plants

Molecular plant, 2020-02, Vol.13 (2), p.215-230

2020

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DYW-type PPR proteins in a heterolobosean protist: Plant RNA editing factors involved in an ancient horizontal gene transfer?

FEBS letters, 2010-10, Vol.584 (20), p.4287-4291

2010

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Multifarious Evolutionary Pathways of a Nuclear RNA Editing Factor: Disjunctions in Coevolution of DOT4 and Its Chloroplast Target rpoC1eU488SL

Genome biology and evolution, 2019-03, Vol.11 (3), p.798-813

2019

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Rickettsial DNA and a trans-splicing rRNA group I intron in the unorthodox mitogenome of the fern Haplopteris ensiformis

Communications biology, 2023-03, Vol.6 (1), p.296-296, Article 296

2023

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deepest divergences in land plants inferred from phylogenomic evidence

Proceedings of the National Academy of Sciences - PNAS, 2006-10, Vol.103 (42), p.15511-15516

2006

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Plant PPRs Come in Multiple Flavors-But Why?

Plant and cell physiology, 2020-10, Vol.61 (10), p.1685-1686

Knoop, Volker

2020

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A hypothesis on the identification of the editing enzyme in plant organelles

FEBS letters, 2007-09, Vol.581 (22), p.4132-4138

2007

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PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation

Bioinformatics and Biology Insights, 2013, Vol.2013 (7), p.1-19

2013

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Convergent Evolution of Fern-Specific Mitochondrial Group II Intron atp1i361g2 and Its Ancient Source Paralogue rps3i249g2 and Independent Losses of Intron and RNA Editing among Pteridaceae

Genome biology and evolution, 2016-08, Vol.8 (8), p.2505-2519

2016

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Assigning DYW‐type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica

The Plant journal : for cell and molecular biology, 2011-07, Vol.67 (2), p.370-380

2011

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A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens

Plant and cell physiology, 2017-03, Vol.58 (3), p.496-507

2017

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C-to-U and U-to-C: RNA editing in plant organelles and beyond

Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0

mitochondrial DNA of land plants: peculiarities in phylogenetic perspective

Expected and unexpected evolution of plant RNA editing factors CLB19, CRR28 and RARE1: retention of CLB19 despite a phylogenetically deep loss of its two known editing targets in Poaceae

Beyond a PPR-RNA recognition code: Many aspects matter for the multi-targeting properties of RNA editing factor PPR56

Plant mitochondrial genome peculiarities evolving in the earliest vascular plant lineages

Chloroplast RNA editing going extreme: more than 3400 events of C-to-U editing in the chloroplast transcriptome of the lycophyte Selaginella uncinata

A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

Towards a plant model for enigmatic U-to-C RNA editing: the organelle genomes, transcriptomes, editomes and candidate RNA editing factors in the hornwort Anthoceros agrestis

Horsetails are the sister group to all other monilophytes and Marattiales are sister to leptosporangiate ferns

Categorizing 161 plant (streptophyte) mitochondrial group II introns into 29 families of related paralogues finds only limited links between intron mobility and intron-borne maturases

Extreme RNA editing in coding islands and abundant microsatellites in repeat sequences of Selaginella moellendorffii mitochondria: the root of frequent plant mtDNA recombination in early tracheophytes

When you can't trust the DNA: RNA editing changes transcript sequences

Plant-type pentatricopeptide repeat proteins with a DYW domain drive C-to-U RNA editing in Escherichia coli

The Expansion and Diversification of Pentatricopeptide Repeat RNA-Editing Factors in Plants

DYW-type PPR proteins in a heterolobosean protist: Plant RNA editing factors involved in an ancient horizontal gene transfer?

Multifarious Evolutionary Pathways of a Nuclear RNA Editing Factor: Disjunctions in Coevolution of DOT4 and Its Chloroplast Target rpoC1eU488SL

Rickettsial DNA and a trans-splicing rRNA group I intron in the unorthodox mitogenome of the fern Haplopteris ensiformis

deepest divergences in land plants inferred from phylogenomic evidence

Plant PPRs Come in Multiple Flavors-But Why?

A hypothesis on the identification of the editing enzyme in plant organelles

PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation

Convergent Evolution of Fern-Specific Mitochondrial Group II Intron atp1i361g2 and Its Ancient Source Paralogue rps3i249g2 and Independent Losses of Intron and RNA Editing among Pteridaceae

Assigning DYW‐type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica

A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens

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