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Production of itaconic acid from alkali pretreated lignin by dynamic two stage bioconversion

Nature communications, 2021-04, Vol.12 (1), p.2261-12, Article 2261

2021

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Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

Microbiome, 2020-04, Vol.8 (1), p.51-15, Article 51

2020

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Quantum biological insights into CRISPR-Cas9 sgRNA efficiency from explainable-AI driven feature engineering

Nucleic acids research, 2023-10, Vol.51 (19), p.10147-10161

2023

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Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

Proceedings of the National Academy of Sciences - PNAS, 2011-08, Vol.108 (33), p.13752-13757

2011

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Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides

Journal of Bacteriology, 2012-11, Vol.194 (21), p.5991-5993

2012

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Nitrogen addition alters soil fungal communities, but root fungal communities are resistant to change

Frontiers in microbiology, 2023-01, Vol.13 (1), p.1033631-1033631

2023

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Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis

Applied and environmental microbiology, 2016-09, Vol.82 (18), p.5698-5708

2016

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Protoplast fusion in Bacillus species produces frequent, unbiased, genome-wide homologous recombination

Nucleic acids research, 2022-06, Vol.50 (11), p.6211-6223

2022

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From wolves to humans: oral microbiome resistance to transfer across mammalian hosts

mBio, 2024-03, Vol.15 (3), p.e0334223-e0334223

2024

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One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation

PloS one, 2019-06, Vol.14 (6), p.e0211310-e0211310

2019

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Nutrient Exposure Alters Microbial Composition, Structure, and Mercury Methylating Activity in Periphyton in a Contaminated Watershed

Frontiers in microbiology, 2021-03, Vol.12 (12), p.647861-647861

2021

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Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells

Scientific reports, 2017-02, Vol.7 (1), p.43583-43583, Article 43583

2017

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Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

Proceedings of the National Academy of Sciences - PNAS, 2010-06, Vol.107 (23), p.10395-10400

2010

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A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies

Frontiers in microbiology, 2017-07, Vol.8, p.1272-1272

2017

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Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85

Scientific reports, 2017-05, Vol.7 (1), p.2277-15, Article 2277

2017

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Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum

Scientific reports, 2017-02, Vol.7 (1), p.43355-43355, Article 43355

2017

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Phylogenomics and genetic analysis of solvent-producing Clostridium species

Scientific data, 2024-05, Vol.11 (1), p.432-432, Article 432

2024

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Seasonality and longer-term development generate temporal dynamics in the Populus microbiome

mSystems, 2024-03, Vol.9 (3), p.e0088623-e0088623

2024

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Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2

Journal of Bacteriology, 2012-06, Vol.194 (12), p.3290-3291

2012

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Cultivating the Bacterial Microbiota of Populus Roots

mSystems, 2021-06, Vol.6 (3)

2021

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Elevated temperature alters microbial communities, but not decomposition rates, during 3 years of in situ peat decomposition

mSystems, 2023-10, Vol.8 (5), p.e0033723-e0033723

2023

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Rex in Caldicellulosiruptor bescii: Novel regulon members and its effect on the production of ethanol and overflow metabolites

MicrobiologyOpen (Weinheim), 2019-02, Vol.8 (2), p.e00639-n/a

2019

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Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome

mSystems, 2022-08, Vol.7 (4), p.e0012022-e0012022

2022

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Fire alters plant microbiome assembly patterns: integrating the plant and soil microbial response to disturbance

The New phytologist, 2021-06, Vol.230 (6), p.2433-2446

2021

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Draft Genome Sequence for Microbacterium laevaniformans Strain OR221, a Bacterium Tolerant to Metals, Nitrate, and Low pH

Journal of Bacteriology, 2012-06, Vol.194 (12), p.3279-3280

2012

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Production of itaconic acid from alkali pretreated lignin by dynamic two stage bioconversion

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

Quantum biological insights into CRISPR-Cas9 sgRNA efficiency from explainable-AI driven feature engineering

Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum

Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides

Nitrogen addition alters soil fungal communities, but root fungal communities are resistant to change

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis

Protoplast fusion in Bacillus species produces frequent, unbiased, genome-wide homologous recombination

From wolves to humans: oral microbiome resistance to transfer across mammalian hosts

One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation

Nutrient Exposure Alters Microbial Composition, Structure, and Mercury Methylating Activity in Periphyton in a Contaminated Watershed

Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells

Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae

A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies

Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85

Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum

Phylogenomics and genetic analysis of solvent-producing Clostridium species

Seasonality and longer-term development generate temporal dynamics in the Populus microbiome

Draft Genome Sequences for Clostridium thermocellum Wild-Type Strain YS and Derived Cellulose Adhesion-Defective Mutant Strain AD2

Cultivating the Bacterial Microbiota of Populus Roots

Elevated temperature alters microbial communities, but not decomposition rates, during 3 years of in situ peat decomposition

Rex in Caldicellulosiruptor bescii: Novel regulon members and its effect on the production of ethanol and overflow metabolites

Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome

Fire alters plant microbiome assembly patterns: integrating the plant and soil microbial response to disturbance

Draft Genome Sequence for Microbacterium laevaniformans Strain OR221, a Bacterium Tolerant to Metals, Nitrate, and Low pH

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