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Cross-talk between mitogenic Ras/MAPK and survival PI3K/Akt pathways: a fine balance

Biochemical Society transactions, 2012-02, Vol.40 (1), p.139-146

2012

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The dynamic control of signal transduction networks in cancer cells

Nature reviews. Cancer, 2015-09, Vol.15 (9), p.515-527

2015

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Evaluating strategies to normalise biological replicates of Western blot data

PloS one, 2014-01, Vol.9 (1), p.e87293-e87293

2014

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Reengineering protein-phosphorylation switches

Science (American Association for the Advancement of Science), 2021-07, Vol.373 (6550), p.25-26

2021

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Drug Resistance Resulting from Kinase Dimerization Is Rationalized by Thermodynamic Factors Describing Allosteric Inhibitor Effects

Cell reports (Cambridge), 2015-09, Vol.12 (11), p.1939-1949

Kholodenko, Boris N.

2015

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Rac1 and RhoA: Networks, loops and bistability

Small GTPases, 2018-07, Vol.9 (4), p.316-321

2018

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Can Systems Biology Advance Clinical Precision Oncology?

Cancers, 2021-12, Vol.13 (24), p.6312

2021

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Signaling pathway models as biomarkers: Patient-specific simulations of JNK activity predict the survival of neuroblastoma patients

Science signaling, 2015-12, Vol.8 (408), p.ra130

2015

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Crosstalk and signaling switches in mitogen-activated protein kinase cascades

Frontiers in physiology, 2012-01, Vol.3, p.355-355

2012

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Ligand-Specific c-Fos Expression Emerges from the Spatiotemporal Control of ErbB Network Dynamics

Cell, 2010-05, Vol.141 (5), p.884-896

2010

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Bistability in the Rac1, PAK, and RhoA Signaling Network Drives Actin Cytoskeleton Dynamics and Cell Motility Switches

Cell systems, 2016-01, Vol.2 (1), p.38-48

2016

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Periodic propagating waves coordinate RhoGTPase network dynamics at the leading and trailing edges during cell migration

eLife, 2020-07, Vol.9

2020

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Performance of objective functions and optimisation procedures for parameter estimation in system biology models

NPJ systems biology and applications, 2017-01, Vol.3 (1), p.20-9, Article 20

2017

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Cell-specific models reveal conformation-specific RAF inhibitor combinations that synergistically inhibit ERK signaling in pancreatic cancer cells

Cell reports (Cambridge), 2024-09, Vol.43 (9), p.114710, Article 114710

2024

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Pseudophosphatase STYX modulates cell-fate decisions and cell migration by spatiotemporal regulation of ERK1/2

Proceedings of the National Academy of Sciences - PNAS, 2013-07, Vol.110 (31), p.E2934-E2943

2013

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Signaling Switches and Bistability Arising from Multisite Phosphorylation in Protein Kinase Cascades

The Journal of cell biology, 2004-02, Vol.164 (3), p.353-359

2004

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Cell-signalling dynamics in time and space

Nature reviews. Molecular cell biology, 2006-03, Vol.7 (3), p.165-176

Kholodenko, Boris N

2006

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Prolactin-stimulated activation of ERK1/2 mitogen-activated protein kinases is controlled by PI3-kinase/Rac/PAK signaling pathway in breast cancer cells

Cellular signalling, 2011-11, Vol.23 (11), p.1794-1805

2011

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A dynamic model of the hypoxia-inducible factor 1α (HIF-1α) network

Journal of cell science, 2013-03, Vol.126 (Pt 6), p.1454-1463

2013

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Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors

Journal of experimental biology, 2003-06, Vol.206 (Pt 12), p.2073-2082

Kholodenko, Boris N

2003

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Cell State Transition Models Stratify Breast Cancer Cell Phenotypes and Reveal New Therapeutic Targets

Cancers, 2024-06, Vol.16 (13), p.2354

2024

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Signalling ballet in space and time

Nature reviews. Molecular cell biology, 2010-06, Vol.11 (6), p.414-426

2010

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Quantitative analysis of signaling networks

Progress in biophysics and molecular biology, 2004-09, Vol.86 (1), p.5-43

2004

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SARAH Domain-Mediated MST2-RASSF Dimeric Interactions

PLoS computational biology, 2016-10, Vol.12 (10), p.e1005051-e1005051

2016

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Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor

PLoS computational biology, 2019-01, Vol.15 (1), p.e1006706-e1006706

2019

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Cross-talk between mitogenic Ras/MAPK and survival PI3K/Akt pathways: a fine balance

The dynamic control of signal transduction networks in cancer cells

Evaluating strategies to normalise biological replicates of Western blot data

Reengineering protein-phosphorylation switches

Drug Resistance Resulting from Kinase Dimerization Is Rationalized by Thermodynamic Factors Describing Allosteric Inhibitor Effects

Rac1 and RhoA: Networks, loops and bistability

Can Systems Biology Advance Clinical Precision Oncology?

Signaling pathway models as biomarkers: Patient-specific simulations of JNK activity predict the survival of neuroblastoma patients

Crosstalk and signaling switches in mitogen-activated protein kinase cascades

Ligand-Specific c-Fos Expression Emerges from the Spatiotemporal Control of ErbB Network Dynamics

Bistability in the Rac1, PAK, and RhoA Signaling Network Drives Actin Cytoskeleton Dynamics and Cell Motility Switches

Periodic propagating waves coordinate RhoGTPase network dynamics at the leading and trailing edges during cell migration

Performance of objective functions and optimisation procedures for parameter estimation in system biology models

Cell-specific models reveal conformation-specific RAF inhibitor combinations that synergistically inhibit ERK signaling in pancreatic cancer cells

Pseudophosphatase STYX modulates cell-fate decisions and cell migration by spatiotemporal regulation of ERK1/2

Signaling Switches and Bistability Arising from Multisite Phosphorylation in Protein Kinase Cascades

Cell-signalling dynamics in time and space

Prolactin-stimulated activation of ERK1/2 mitogen-activated protein kinases is controlled by PI3-kinase/Rac/PAK signaling pathway in breast cancer cells

A dynamic model of the hypoxia-inducible factor 1α (HIF-1α) network

Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors

Cell State Transition Models Stratify Breast Cancer Cell Phenotypes and Reveal New Therapeutic Targets

Signalling ballet in space and time

Quantitative analysis of signaling networks

SARAH Domain-Mediated MST2-RASSF Dimeric Interactions

Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor

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