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SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

Nature communications, 2021-05, Vol.12 (1), p.2642-2642, Article 2642

2021

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ChromHMM: automating chromatin-state discovery and characterization

Nature methods, 2012-03, Vol.9 (3), p.215-216

2012

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Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues

Nature biotechnology, 2015-04, Vol.33 (4), p.364-376

2015

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Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments

Nucleic acids research, 2014-03, Vol.42 (5), p.2976-2987

2014

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HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease

Nucleic acids research, 2016-01, Vol.44 (D1), p.D877-D881

2016

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Discovery and characterization of chromatin states for systematic annotation of the human genome

Nature biotechnology, 2010-08, Vol.28 (8), p.817-825

2010

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Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

Genome research, 2014-04, Vol.24 (4), p.616-628

2014

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Interpreting noncoding genetic variation in complex traits and human disease

Nature biotechnology, 2012-11, Vol.30 (11), p.1095-1106

2012

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Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases

Nucleic acids research, 2016-10, Vol.44 (18), p.e144-e144

2016

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Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes

Nature medicine, 2020-06, Vol.26 (6), p.952-963

2020

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PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

Bioinformatics, 2011-07, Vol.27 (13), p.i275-i282

2011

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Regulatory genomic circuitry of human disease loci by integrative epigenomics

Nature (London), 2021-02, Vol.590 (7845), p.300-307

2021

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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

Nature (London), 2014-01, Vol.505 (7485), p.701-705

2014

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FTO Obesity Variant Circuitry and Adipocyte Browning in Humans

The New England journal of medicine, 2015-09, Vol.373 (10), p.895-907

2015

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A multiresolution framework to characterize single-cell state landscapes

Nature communications, 2020-10, Vol.11 (1), p.5399-5399, Article 5399

2020

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Network deconvolution as a general method to distinguish direct dependencies in networks

Nature biotechnology, 2013-08, Vol.31 (8), p.726-733

2013

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Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

Nature (London), 2015-02, Vol.518 (7539), p.365-369

2015

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Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions

Science (American Association for the Advancement of Science), 2012-09, Vol.337 (6102), p.1675-1678

2012

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High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies

Nature communications, 2021-07, Vol.12 (1), p.4138-4138, Article 4138

2021

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Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

Nature communications, 2019-10, Vol.10 (1), p.4902-9, Article 4902

2019

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CoCoA-diff: counterfactual inference for single-cell gene expression analysis

Genome Biology, 2021-08, Vol.22 (1), p.228-23, Article 228

2021

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Multiple knockout mouse models reveal lincRNAs are required for life and brain development

eLife, 2013-12, Vol.2, p.e01749-e01749

2013

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Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer

Nature biotechnology, 2022-02, Vol.40 (2), p.209-217

2022

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Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types

Genome research, 2013-07, Vol.23 (7), p.1142-1154

2013

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A polygenic score method boosted by non-additive models

Nature communications, 2024-05, Vol.15 (1), p.4433-13, Article 4433

2024

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SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes

ChromHMM: automating chromatin-state discovery and characterization

Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues

Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments

HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease

Discovery and characterization of chromatin states for systematic annotation of the human genome

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

Interpreting noncoding genetic variation in complex traits and human disease

Joint Bayesian inference of risk variants and tissue-specific epigenomic enrichments across multiple complex human diseases

Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

Regulatory genomic circuitry of human disease loci by integrative epigenomics

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

FTO Obesity Variant Circuitry and Adipocyte Browning in Humans

A multiresolution framework to characterize single-cell state landscapes

Network deconvolution as a general method to distinguish direct dependencies in networks

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions

High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

CoCoA-diff: counterfactual inference for single-cell gene expression analysis

Multiple knockout mouse models reveal lincRNAs are required for life and brain development

Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer

Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types

A polygenic score method boosted by non-additive models

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