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Reproducible big data science: A case study in continuous FAIRness

PloS one, 2019-04, Vol.14 (4), p.e0213013

2019

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Integration of genomics and transcriptomics predicts diabetic retinopathy susceptibility genes

eLife, 2020-11, Vol.9

2020

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Correction: Reproducible big data science: A case study in continuous FAIRness

PloS one, 2023-11, Vol.18 (11), p.e0294883-e0294883

2023

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A novel MERTK mutation causing retinitis pigmentosa

Graefe's archive for clinical and experimental ophthalmology, 2017-08, Vol.255 (8), p.1613-1619

2017

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Accurate Prediction of Chromosome-Level CNVs from Targeted NGS

Blood, 2021-11, Vol.138 (Supplement 1), p.3994-3994

2021

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Single Tube Molecular Profiling of ALL Samples Reveals Integrated Molecular Signature and Highlights Gene Regulatory Networks

Blood, 2022-11, Vol.140 (Supplement 1), p.11870-11871

2022

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Accessing Genomic Alternations in Chronic Lymphocytic Leukemia Using an NGS-Based Comprehensive Genomic Profiling Assay

Blood, 2020-11, Vol.136 (Supplement 1), p.8-8

2020

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Abstract 4294: Bridging the gap between targeted NGS and FISH gene-level CNV detection capabilities in hematologic malignancies

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.4294-4294

2023

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Abstract 241: An efficient probe design algorithm for direct fusion targeting from RNA

Cancer research (Chicago, Ill.), 2021-07, Vol.81 (13_Supplement), p.241-241

2021

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Detection of CCND1 Overexpression By RNA-Seq from Tna Samples As a Surrogate for t(11:14) Translocation Traditionally Measured By FISH in Multiple Myeloma Patients for Improved Patient Care

Blood, 2021-11, Vol.138 (Supplement 1), p.2961-2961

2021

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Detection of PAX5 Overexpression By RNA-Seq for B-Cell Lineage Detection in Acute Lymphocytic Leukemia

Blood, 2021-11, Vol.138 (Supplement 1), p.4925-4925

2021

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A Novel NGS-Based Simultaneous Detection of DNA and RNA Biomarkers Using Total Nucleic Acid (TNA) for Acute Lymphocytic Leukemia (ALL)

Blood, 2021-11, Vol.138 (Supplement 1), p.1875-1875

2021

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A Novel Multimodal Next Generation Sequencing Assay with Total Nucleic Acid Input to Provide Comprehensive Genomic Profiling for Hematologic Malignancies

Blood, 2020-11, Vol.136 (Supplement 1), p.29-30

2020

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Abstract 182: A comprehensive genomic profiling approach to interrogate hematologic malignancies using a novel multimodal next generation sequencing assay in a single-tube

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.182-182

2020

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Expression profiling of genes regulated by Sphingosine kinase 2 in a murine model of Pseudomonas aeruginosa mediated acute lung inflammation

The FASEB journal, 2018-04, Vol.32 (S1), p.540.11-540.11

2018

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Abstract 219: Single-tube NGS profiling allows identification of molecular signature in ALL patients

Cancer research (Chicago, Ill.), 2023-04, Vol.83 (7_Supplement), p.219-219

2023

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Correction: Reproducible big data science: A case study in continuous FAIRness

PloS one, 2023-01, Vol.18 (11), p.e0294883

2023

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MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER’S DISEASE

Alzheimer's & dementia, 2018-07, Vol.14 (7), p.P1014-P1015

2018

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O3‐03‐01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE

Alzheimer's & dementia, 2018-07, Vol.14 (7S_Part_19), p.P1014-P1015

2018

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Naïve Bayes for microRNA target predictions—machine learning for microRNA targets

Bioinformatics, 2007-11, Vol.23 (22), p.2987-2992

2007

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Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types

Cell reports (Cambridge), 2020-08, Vol.32 (7), p.108029-108029, Article 108029

2020

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Recursive cluster elimination (RCE) for classification and feature selection from gene expression data

BMC bioinformatics, 2007-05, Vol.8 (1), p.144-144, Article 144

2007

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Tertiary Motifs Revealed in Analyses of Higher-Order RNA Junctions

Journal of molecular biology, 2009-10, Vol.393 (1), p.67-82

2009

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Genome-wide association analysis identifies ancestry-specific genetic variation associated with acute response to metformin and glipizide in SUGAR-MGH

Diabetologia, 2023-07, Vol.66 (7), p.1260-1272

2023

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Learning from positive examples when the negative class is undetermined--microRNA gene identification

Algorithms for molecular biology, 2008-01, Vol.3 (1), p.2-2, Article 2

2008

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Reproducible big data science: A case study in continuous FAIRness

Integration of genomics and transcriptomics predicts diabetic retinopathy susceptibility genes

Correction: Reproducible big data science: A case study in continuous FAIRness

A novel MERTK mutation causing retinitis pigmentosa

Accurate Prediction of Chromosome-Level CNVs from Targeted NGS

Single Tube Molecular Profiling of ALL Samples Reveals Integrated Molecular Signature and Highlights Gene Regulatory Networks

Accessing Genomic Alternations in Chronic Lymphocytic Leukemia Using an NGS-Based Comprehensive Genomic Profiling Assay

Abstract 4294: Bridging the gap between targeted NGS and FISH gene-level CNV detection capabilities in hematologic malignancies

Abstract 241: An efficient probe design algorithm for direct fusion targeting from RNA

Detection of CCND1 Overexpression By RNA-Seq from Tna Samples As a Surrogate for t(11:14) Translocation Traditionally Measured By FISH in Multiple Myeloma Patients for Improved Patient Care

Detection of PAX5 Overexpression By RNA-Seq for B-Cell Lineage Detection in Acute Lymphocytic Leukemia

A Novel NGS-Based Simultaneous Detection of DNA and RNA Biomarkers Using Total Nucleic Acid (TNA) for Acute Lymphocytic Leukemia (ALL)

A Novel Multimodal Next Generation Sequencing Assay with Total Nucleic Acid Input to Provide Comprehensive Genomic Profiling for Hematologic Malignancies

Abstract 182: A comprehensive genomic profiling approach to interrogate hematologic malignancies using a novel multimodal next generation sequencing assay in a single-tube

Expression profiling of genes regulated by Sphingosine kinase 2 in a murine model of Pseudomonas aeruginosa mediated acute lung inflammation

Abstract 219: Single-tube NGS profiling allows identification of molecular signature in ALL patients

Correction: Reproducible big data science: A case study in continuous FAIRness

MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER’S DISEASE

O3‐03‐01: MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER'S DISEASE

Naïve Bayes for microRNA target predictions—machine learning for microRNA targets

Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types

Recursive cluster elimination (RCE) for classification and feature selection from gene expression data

Tertiary Motifs Revealed in Analyses of Higher-Order RNA Junctions

Genome-wide association analysis identifies ancestry-specific genetic variation associated with acute response to metformin and glipizide in SUGAR-MGH

Learning from positive examples when the negative class is undetermined--microRNA gene identification

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